Miyakogusa Predicted Gene

Lj0g3v0151489.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151489.1 tr|B9GVV8|B9GVV8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_554914 PE=4
SV=1,53.16,0.00000000007,Tub,Tubby, C-terminal; no description,Tubby,
C-terminal; seg,NULL; Tubby C-terminal domain-like,Tubb,CUFF.9317.1
         (342 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g105390.1 | tubby-like protein | HC | chr2:45442083-454401...   392   e-109

>Medtr2g105390.1 | tubby-like protein | HC | chr2:45442083-45440125
           | 20130731
          Length = 361

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/261 (75%), Positives = 217/261 (83%), Gaps = 11/261 (4%)

Query: 74  KPSSLQFCMKMNDPLDSHHSSTTSLNIWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGR 133
           K +SLQ CM++N         ++SL IWD SDSEAAPASSWSTLPNKSLICR LP+DIGR
Sbjct: 60  KSNSLQLCMQINS---DSSHFSSSLKIWDHSDSEAAPASSWSTLPNKSLICRTLPIDIGR 116

Query: 134 CTCVIVKEATPQGLS--GGTFFSLYTYEGQGRQNRKLAVALHKRRNGRSHFTVAQNLKGL 191
           CTCVIVKE TPQGLS     FFSLYTYEG GRQNRKLAVA HKRR+GRSHFTVAQNLKGL
Sbjct: 117 CTCVIVKEPTPQGLSRSAANFFSLYTYEGHGRQNRKLAVAHHKRRSGRSHFTVAQNLKGL 176

Query: 192 MSNS--DESFLGTVTANLMGSKYCIWDQG-HRHRSHSKQPKLPLSVVRYIPTIATCTGSH 248
           +SNS  D++FLGTVT+NL GSKY IWDQG HRH+  SK P   L+VV Y+PTIATCTG+H
Sbjct: 177 LSNSHDDDTFLGTVTSNLTGSKYHIWDQGYHRHKPRSKPP---LAVVEYVPTIATCTGTH 233

Query: 249 RSMRAYIPKHQSMSLKNTTQAQHIKGLPMNWEGKLDKVHQLFTRVPLYNKISKQLELDYR 308
           R+++AYIP HQSMS KNT Q QHIKGLPMNWEGK+DKVHQLF+R PLYNK +KQ ELDYR
Sbjct: 234 RTIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKMDKVHQLFSRDPLYNKSTKQFELDYR 293

Query: 309 DKGRPELRIQRSAKNFQLTLE 329
           DKGRP L IQRS KNFQLTLE
Sbjct: 294 DKGRPGLGIQRSVKNFQLTLE 314