Miyakogusa Predicted Gene

Lj0g3v0150479.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150479.2 tr|B9HKE2|B9HKE2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766427 PE=4 SV=1,46.67,2e-18,Ring
finger,Zinc finger, RING-type; zf-C3HC4,Zinc finger, C3HC4 RING-type;
coiled-coil,NULL; no desc,CUFF.9242.2
         (468 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | ...   208   8e-54
Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | ...   174   2e-43
Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | ...   174   2e-43
Medtr1g057690.1 | hypothetical protein | LC | chr1:25354425-2535...    94   2e-19
Medtr1g093160.1 | hypothetical protein | HC | chr1:33790576-3378...    62   1e-09
Medtr2g090595.1 | RING zinc finger protein | HC | chr2:38732918-...    51   2e-06
Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protei...    51   3e-06
Medtr2g090595.2 | RING zinc finger protein | HC | chr2:38732994-...    51   3e-06

>Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
           | chr7:47590926-47596695 | 20130731
          Length = 428

 Score =  208 bits (530), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 109/131 (83%)

Query: 23  LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
           LEACM CPLC  L K+ATTISLCLHTFCRKCI+EKLSDEE++ CPVCNIDLG LP+EKLR
Sbjct: 10  LEACMTCPLCHKLLKDATTISLCLHTFCRKCIHEKLSDEEVDSCPVCNIDLGILPVEKLR 69

Query: 83  PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
           PDHNLQDIR  +FP +R+K++ +EVVPS   P K+KERSLSS VVSAPKVST T  TGK 
Sbjct: 70  PDHNLQDIRTKIFPCKRQKVKAEEVVPSTPLPPKRKERSLSSLVVSAPKVSTHTTFTGKR 129

Query: 143 IKTGTRKAAAF 153
            KT TRKAAA 
Sbjct: 130 TKTATRKAAAL 140


>Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
           | chr7:38583482-38588867 | 20130731
          Length = 429

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 99/131 (75%), Gaps = 4/131 (3%)

Query: 23  LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
           + ACM CPLC NLFK+ TTIS CLHTFCRKCIY+K +DE++E CPVCNIDLGC+P+EKLR
Sbjct: 13  IAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPLEKLR 72

Query: 83  PDHNLQDIRAIVFPFERRKIEVQE---VVPSISSPGKKKERSLSSFVVSAPKVSTDTGLT 139
           PDH  QD+RA +FP + RK++  E   V  S   P K+KERSLSS VV+ P+VS  T +T
Sbjct: 73  PDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVVNTPRVSVQTTMT 132

Query: 140 GKSIKTGTRKA 150
           G+  K  TRKA
Sbjct: 133 GRRTKP-TRKA 142


>Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | HC
           | chr7:38583482-38588861 | 20130731
          Length = 428

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 99/131 (75%), Gaps = 4/131 (3%)

Query: 23  LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
           + ACM CPLC NLFK+ TTIS CLHTFCRKCIY+K +DE++E CPVCNIDLGC+P+EKLR
Sbjct: 13  IAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPLEKLR 72

Query: 83  PDHNLQDIRAIVFPFERRKIEVQE---VVPSISSPGKKKERSLSSFVVSAPKVSTDTGLT 139
           PDH  QD+RA +FP + RK++  E   V  S   P K+KERSLSS VV+ P+VS  T +T
Sbjct: 73  PDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVVNTPRVSVQTTMT 132

Query: 140 GKSIKTGTRKA 150
           G+  K  TRKA
Sbjct: 133 GRRTKP-TRKA 142


>Medtr1g057690.1 | hypothetical protein | LC |
          chr1:25354425-25355604 | 20130731
          Length = 154

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 50/72 (69%)

Query: 26 CMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLRPDH 85
          C+ C LC+ L  +AT I +C HTFC+KCIY KLSDE ++ CPVC++ LG  P  KLR D 
Sbjct: 17 CLSCELCKQLLTDATKIIICFHTFCKKCIYTKLSDEILDCCPVCDVHLGIDPFSKLRSDF 76

Query: 86 NLQDIRAIVFPF 97
          NLQD R  +FP 
Sbjct: 77 NLQDTRNRLFPI 88


>Medtr1g093160.1 | hypothetical protein | HC |
           chr1:33790576-33789951 | 20130731
          Length = 116

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 43/103 (41%)

Query: 23  LEACMKCPLCRNLFKEATTISLCLHT---------------------------------- 48
           L A + CPLC N+F+E TTI  CLHT                                  
Sbjct: 11  LTAPLTCPLCSNIFREPTTIPECLHTCKSFLFSSSFSPLFNYAMMNIMPCFHLCLLCDEY 70

Query: 49  ---------FCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
                     CR+CI  K  DE +  CPVC +DLG  P++KL+
Sbjct: 71  MPKSLSLVTVCRECIERKFIDERLNHCPVCKVDLGYYPLDKLK 113


>Medtr2g090595.1 | RING zinc finger protein | HC |
           chr2:38732918-38738851 | 20130731
          Length = 504

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 27  MKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEF----CPVCNIDLGCLPMEKLR 82
           ++CP+C  + K+  T+  CLH FCR+CI     D+ M      CP C     C     LR
Sbjct: 123 VQCPICLGIIKKTRTVMECLHRFCRECI-----DKSMRLGNNECPACRT--HCASRRSLR 175

Query: 83  PDHNLQDIRAIVFP 96
            D N   + A ++P
Sbjct: 176 DDPNYDALIATLYP 189


>Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protein,
           putative | HC | chr4:35141489-35136880 | 20130731
          Length = 440

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 27  MKCPLCRNLFKEATTISLCLHTFCRKCIYE--KLSDEEMEFCPVCNIDLGCLPMEKLRPD 84
           ++CP+C  + ++  T+  CLH FCR+CI +  +L + E   CP C     C     LR D
Sbjct: 70  VQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNE---CPACRTH--CASRRSLRDD 124

Query: 85  HNLQDIRAIVFP 96
            N   + A ++P
Sbjct: 125 PNYDALIAAIYP 136


>Medtr2g090595.2 | RING zinc finger protein | HC |
           chr2:38732994-38739213 | 20130731
          Length = 433

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 27  MKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEF----CPVCNIDLGCLPMEKLR 82
           ++CP+C  + K+  T+  CLH FCR+CI     D+ M      CP C     C     LR
Sbjct: 123 VQCPICLGIIKKTRTVMECLHRFCRECI-----DKSMRLGNNECPACRTH--CASRRSLR 175

Query: 83  PDHNLQDIRAIVFP 96
            D N   + A ++P
Sbjct: 176 DDPNYDALIATLYP 189