Miyakogusa Predicted Gene
- Lj0g3v0150479.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0150479.1 tr|C7IZM4|C7IZM4_ORYSJ Os03g0632800 protein
OS=Oryza sativa subsp. japonica GN=Os03g0632800 PE=4
SV=,65.71,6e-18,no description,Zinc finger, RING/FYVE/PHD-type;
seg,NULL; RING FINGER PROTEIN,NULL; RING/U-box,NULL;,CUFF.9242.1
(427 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | ... 531 e-151
Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | ... 324 1e-88
Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | ... 323 3e-88
Medtr1g093150.1 | hypothetical protein | LC | chr1:33789663-3378... 122 6e-28
Medtr1g057690.1 | hypothetical protein | LC | chr1:25354425-2535... 97 3e-20
Medtr7g021270.1 | hypothetical protein | HC | chr7:6706427-67050... 62 1e-09
Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protei... 52 1e-06
Medtr2g090595.2 | RING zinc finger protein | HC | chr2:38732994-... 52 2e-06
Medtr2g090595.1 | RING zinc finger protein | HC | chr2:38732918-... 51 2e-06
>Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:47590926-47596695 | 20130731
Length = 428
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/423 (63%), Positives = 311/423 (73%), Gaps = 13/423 (3%)
Query: 16 ERQTLEACMKCPLCYKIFREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCMAV 75
+R+ LEACM CPLC+K+ ++ATTISLCLHTFCRKCI+EKLSDEE+D CPVCNIDLG + V
Sbjct: 6 KRENLEACMTCPLCHKLLKDATTISLCLHTFCRKCIHEKLSDEEVDSCPVCNIDLGILPV 65
Query: 76 EKLRPDHNLQDMRAKLFPFKQKKIRPQEVVPSVSPPAKRKERSLSSLVVSAPKVSTNXXX 135
EKLRPDHNLQD+R K+FP K++K++ +EVVPS P KRKERSLSSLVVSAPKVST+
Sbjct: 66 EKLRPDHNLQDIRTKIFPCKRQKVKAEEVVPSTPLPPKRKERSLSSLVVSAPKVSTHTTF 125
Query: 136 XXXXXXXXXXXXXXLRGCNFNLEESIKTEGKHGEHNLVPSTAEPSKKHRPNEDTKNSMDL 195
LRGC+F EE+IK E H E N S AE SKK+RPNEDT N++DL
Sbjct: 126 TGKRTKTATRKAAALRGCSFIPEETIKKEETHNEDNPDSSIAETSKKNRPNEDTDNNIDL 185
Query: 196 TEEKVDLWTPLHCLLEVANRTKFSKSNSQGTPHAKLEGNLATPQGGQXXXXXXXXXXXLA 255
TE K DLWTPL+CL+E ANRTK S+SN QGTP KLE TP GG
Sbjct: 186 TEGKADLWTPLNCLVEAANRTKSSRSNLQGTPLTKLESP-TTPHGGLEMSEITTKSEPPT 244
Query: 256 SVQS------AKTKDNGHKAKLGDDKDGKTFPSGPRKRRRVRPDSQKKKAA------SKI 303
SVQ K K NGHK K GDDK G T PSGP KR+R+RP QK+ AA +++
Sbjct: 245 SVQGELHMPKTKNKSNGHKTKFGDDKGGNTMPSGPVKRKRMRPSKQKRAAAFEMSASAQL 304
Query: 304 MLDATESRCNGENSAIWFSLVASEDQKGEFPLPQISACYLRIKDGNVPVSFIHKYLAKKL 363
MLDATESRCN +N+ IWF+LVASEDQ GE LPQISACYLRIKDG VPVS+I KYL KKL
Sbjct: 305 MLDATESRCNRKNNPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSYIQKYLMKKL 364
Query: 364 NLASEAEVVITCRGQSLLPSLKLHNIVDLWLCTTPSSKKIRASVGSSAKEFVMVLSYSRN 423
NLASEAEV I CRGQS+LP+L+LHN+VDLW CT +SKK+ ASVGSSAK+FVM LSY R
Sbjct: 365 NLASEAEVEIMCRGQSVLPTLQLHNLVDLWFCTASTSKKLPASVGSSAKDFVMALSYCRK 424
Query: 424 PLP 426
LP
Sbjct: 425 TLP 427
>Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:38583482-38588867 | 20130731
Length = 429
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 192/433 (44%), Positives = 261/433 (60%), Gaps = 43/433 (9%)
Query: 16 ERQTLEACMKCPLCYKIFREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCMAV 75
+R+T+ ACM CPLC +F++ TTIS CLHTFCRKCIY+K +DE+++CCPVCNIDLGC+ +
Sbjct: 9 KRETIAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPL 68
Query: 76 EKLRPDHNLQDMRAKLFPFKQKKIR---PQEVVPSVSPPAKRKERSLSSLVVSAPKVSTN 132
EKLRPDH QD+RAK+FP K +K++ P+ V S PAKRKERSLSSLVV+ P+VS
Sbjct: 69 EKLRPDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVVNTPRVSVQ 128
Query: 133 XXXXXXXXXXXXXXXXXLRGCNFNLEESIKTEGK------------HGEHNLVPSTAEPS 180
+F++++SIK E + + L + + S
Sbjct: 129 TTMTGRRTKPTRKASSLRSS-SFSIDKSIKKEAELLDDCPESSSSPEASNKLRQNNGQQS 187
Query: 181 K--KHRPNEDTKNSMDLTEEKVDLWTPLHCLLEVANRTKFSKSNSQGTPHAKLEGNLATP 238
+ + PN T+N + K+DLW PL+CL+EVA+RTK KSN+ AK E A
Sbjct: 188 EGSQSAPNRVTENDSKTCDAKMDLWKPLNCLVEVASRTKSLKSNNIQGSDAKPEPAQANE 247
Query: 239 QGGQXXXXXXXXXXXLASVQSAKTKDNGHKAKLGDDKDGKTFP-----SGPRKRRRVRPD 293
G Q A V+ D+ FP + P K RRVR
Sbjct: 248 SGSQVQKIKNKEKKRKAKVE---------------DESISPFPVSSDTAKPNKLRRVRRK 292
Query: 294 SQ---KKKAASKIMLDATESRCNGENSAIWFSLVASEDQKGEFPLPQISACYLRIKDGNV 350
+ + + + ++D+T S+ + IWFSLVASE+Q+G+ PLPQI A Y+RIKDG+V
Sbjct: 293 KEPFGESGISPQAVVDSTGSKL-FKGGPIWFSLVASENQEGDTPLPQIPASYVRIKDGSV 351
Query: 351 PVSFIHKYLAKKLNLASEAEVVITCRGQSLLPSLKLHNIVDLWLCTTPS-SKKIRASVGS 409
PVSFI KYL KKL+L +E E+ I C GQ +LP+L LHN+V+LWL +T S S +I A +GS
Sbjct: 352 PVSFIQKYLMKKLDLTNETEIEIICMGQPVLPTLTLHNLVELWLDSTASTSHRIPAIIGS 411
Query: 410 SAKEFVMVLSYSR 422
SAK+FVMVL+Y+R
Sbjct: 412 SAKDFVMVLAYAR 424
>Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:38583482-38588861 | 20130731
Length = 428
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 191/432 (44%), Positives = 259/432 (59%), Gaps = 42/432 (9%)
Query: 16 ERQTLEACMKCPLCYKIFREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCMAV 75
+R+T+ ACM CPLC +F++ TTIS CLHTFCRKCIY+K +DE+++CCPVCNIDLGC+ +
Sbjct: 9 KRETIAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPL 68
Query: 76 EKLRPDHNLQDMRAKLFPFKQKKIR---PQEVVPSVSPPAKRKERSLSSLVVSAPKVSTN 132
EKLRPDH QD+RAK+FP K +K++ P+ V S PAKRKERSLSSLVV+ P+VS
Sbjct: 69 EKLRPDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVVNTPRVSVQ 128
Query: 133 XXXXXXXXXXXXXXXXXLRGCNFNLEESIKTEGK------------HGEHNLVPSTAEP- 179
+F++++SIK E + + L + +
Sbjct: 129 TTMTGRRTKPTRKASSLRSS-SFSIDKSIKKEAELLDDCPESSSSPEASNKLRQNNGQSE 187
Query: 180 SKKHRPNEDTKNSMDLTEEKVDLWTPLHCLLEVANRTKFSKSNSQGTPHAKLEGNLATPQ 239
+ PN T+N + K+DLW PL+CL+EVA+RTK KSN+ AK E A
Sbjct: 188 GSQSAPNRVTENDSKTCDAKMDLWKPLNCLVEVASRTKSLKSNNIQGSDAKPEPAQANES 247
Query: 240 GGQXXXXXXXXXXXLASVQSAKTKDNGHKAKLGDDKDGKTFP-----SGPRKRRRVRPDS 294
G Q A V+ D+ FP + P K RRVR
Sbjct: 248 GSQVQKIKNKEKKRKAKVE---------------DESISPFPVSSDTAKPNKLRRVRRKK 292
Query: 295 Q---KKKAASKIMLDATESRCNGENSAIWFSLVASEDQKGEFPLPQISACYLRIKDGNVP 351
+ + + + ++D+T S+ + IWFSLVASE+Q+G+ PLPQI A Y+RIKDG+VP
Sbjct: 293 EPFGESGISPQAVVDSTGSKL-FKGGPIWFSLVASENQEGDTPLPQIPASYVRIKDGSVP 351
Query: 352 VSFIHKYLAKKLNLASEAEVVITCRGQSLLPSLKLHNIVDLWLCTTPS-SKKIRASVGSS 410
VSFI KYL KKL+L +E E+ I C GQ +LP+L LHN+V+LWL +T S S +I A +GSS
Sbjct: 352 VSFIQKYLMKKLDLTNETEIEIICMGQPVLPTLTLHNLVELWLDSTASTSHRIPAIIGSS 411
Query: 411 AKEFVMVLSYSR 422
AK+FVMVL+Y+R
Sbjct: 412 AKDFVMVLAYAR 423
>Medtr1g093150.1 | hypothetical protein | LC |
chr1:33789663-33787293 | 20130731
Length = 411
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Query: 319 IWFSLVASEDQKGEFPLPQISACYLRIKDGNVPVSFIHKYLAKKLNLASEAEVVITCRGQ 378
IWFSLVAS++Q LPQIS+ Y+ +++G++PVS I K+L +KL+LASEAEV I RG+
Sbjct: 306 IWFSLVASKEQ-DVGALPQISSPYIMVRNGSLPVSHIKKHLVQKLDLASEAEVEILLRGK 364
Query: 379 SLLPSLKLHNIVDLWLCTTPSSKKIRASVGSSAKEFVMVLSYSR 422
+L S++L N+V++WL T P +++I+ SVGSSAK+FVMVLSY R
Sbjct: 365 PVLCSMQLQNLVEMWLETMPKNERIQTSVGSSAKDFVMVLSYGR 408
>Medtr1g057690.1 | hypothetical protein | LC |
chr1:25354425-25355604 | 20130731
Length = 154
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 23 CMKCPLCYKIFREATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCMAVEKLRPDH 82
C+ C LC ++ +AT I +C HTFC+KCIY KLSDE +DCCPVC++ LG KLR D
Sbjct: 17 CLSCELCKQLLTDATKIIICFHTFCKKCIYTKLSDEILDCCPVCDVHLGIDPFSKLRSDF 76
Query: 83 NLQDMRAKLFPFKQKK 98
NLQD R +LFP +++
Sbjct: 77 NLQDTRNRLFPIGKEE 92
>Medtr7g021270.1 | hypothetical protein | HC | chr7:6706427-6705001
| 20130731
Length = 366
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 316 NSAIWFSLVASEDQKGEFPLPQISACYLRIKDGNVPVSFIHKYLAKKLNLASEAEVVI 373
+S IWF L AS++Q E LPQI YLRIKDG + V + KYL KL L SE+EV+
Sbjct: 306 HSGIWFMLQASQNQLKEPFLPQIPKNYLRIKDGRMTVRLLFKYLVSKLKLESESEVIF 363
>Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protein,
putative | HC | chr4:35141489-35136880 | 20130731
Length = 440
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 24 MKCPLCYKIFREATTISLCLHTFCRKCIYE--KLSDEEMDCCPVCNIDLGCMAVEKLRPD 81
++CP+C I R+ T+ CLH FCR+CI + +L + E CP C C + LR D
Sbjct: 70 VQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNE---CPACRTH--CASRRSLRDD 124
Query: 82 HNLQDMRAKLFP 93
N + A ++P
Sbjct: 125 PNYDALIAAIYP 136
>Medtr2g090595.2 | RING zinc finger protein | HC |
chr2:38732994-38739213 | 20130731
Length = 433
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 24 MKCPLCYKIFREATTISLCLHTFCRKCIYE--KLSDEEMDCCPVCNIDLGCMAVEKLRPD 81
++CP+C I ++ T+ CLH FCR+CI + +L + E CP C C + LR D
Sbjct: 123 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE---CPACRT--HCASRRSLRDD 177
Query: 82 HNLQDMRAKLFP------------FKQKKIRPQEVVPSVSPPAKRKERSLSSLVVSAPKV 129
N + A L+P +++K R +++ S++ KR+ +LS P
Sbjct: 178 PNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQSEALSKKRKDTPSS 237
Query: 130 ST 131
S+
Sbjct: 238 SS 239
>Medtr2g090595.1 | RING zinc finger protein | HC |
chr2:38732918-38738851 | 20130731
Length = 504
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 24 MKCPLCYKIFREATTISLCLHTFCRKCIYE--KLSDEEMDCCPVCNIDLGCMAVEKLRPD 81
++CP+C I ++ T+ CLH FCR+CI + +L + E CP C C + LR D
Sbjct: 123 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE---CPACRT--HCASRRSLRDD 177
Query: 82 HNLQDMRAKLFP------------FKQKKIRPQEVVPSVSPPAKRKERSLSSLVVSAPKV 129
N + A L+P +++K R +++ S++ KR+ +LS P
Sbjct: 178 PNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQSEALSKKRKDTPSS 237
Query: 130 ST 131
S+
Sbjct: 238 SS 239