Miyakogusa Predicted Gene

Lj0g3v0150329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150329.1 tr|G7I3N6|G7I3N6_MEDTR Origin recognition complex
subunit OS=Medicago truncatula GN=MTR_1g019770 PE=,83.38,0,SUBFAMILY
NOT NAMED,NULL; ORIGIN RECOGNITION COMPLEX SUBUNIT 2,Origin
recognition complex, subunit 2,CUFF.9221.1
         (368 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g019770.1 | origin recognition complex second largest subu...   617   e-177

>Medtr1g019770.1 | origin recognition complex second largest subunit
           2 | HC | chr1:6022603-6018832 | 20130731
          Length = 361

 Score =  617 bits (1590), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 290/349 (83%), Positives = 321/349 (91%), Gaps = 6/349 (1%)

Query: 20  FSRNYFLAKELASSVKKSKQKITDINVVDEQELREAALHIQPKHENEIALLMDSYKAMYP 79
           FSRNYFLAKEL SSVKKSK KITDI+VVDEQELREA+LHIQPKHE EIA+L+DSY A+YP
Sbjct: 19  FSRNYFLAKELTSSVKKSKHKITDIDVVDEQELREASLHIQPKHEKEIAVLIDSYAAVYP 78

Query: 80  EWLFALKCGFGLLMYGFGSKKAMIEDFASRALAEYSVVVINGYLQTINLKQVVVALADLL 139
           EWL +L+CGF LLMYGFGSKKA+IEDFAS+ L EYSVVVINGYLQTINLKQV++ALA+LL
Sbjct: 79  EWLLSLRCGFALLMYGFGSKKALIEDFASKTLTEYSVVVINGYLQTINLKQVLIALAELL 138

Query: 140 CDYMKTKRRVSTRDLPKSQQPYNSQSMDDLLTFLDEVELEDGDCFVCVVIHNIDGPGLRD 199
           CD +K KR+VS R      QP ++QS++DLLT L EVE+ED D FVCVVIHNIDGPGLRD
Sbjct: 139 CDQVKAKRKVSGR------QPSSTQSIEDLLTLLYEVEVEDSDSFVCVVIHNIDGPGLRD 192

Query: 200 YETQQYLARLAACTHIRIVASIDHVNAPLYWDKNMAHTQFNWSWYHVPTFSPYKVEGMFY 259
            ETQQYLARLA+CTHIRIVASIDHVNAPL+WDKNMAHTQFNW W+HVPTFSPYK+EGMFY
Sbjct: 193 SETQQYLARLASCTHIRIVASIDHVNAPLFWDKNMAHTQFNWCWHHVPTFSPYKIEGMFY 252

Query: 260 PMILAHGSASQTVKTATIVLQSLTPNAQSVFKVLAEHQLSHPEEGMPISDLYSVCRERFL 319
           P+ILAHGSASQ+VKTA IVLQSLTPNAQSVFKVLAE+Q+SHP+EGMPISDLYSVCRERFL
Sbjct: 253 PLILAHGSASQSVKTAAIVLQSLTPNAQSVFKVLAEYQISHPDEGMPISDLYSVCRERFL 312

Query: 320 VSSQVTLNSHLTEFKDHELVKIKRHTDGQDCLYIPLAAEALQKVLLEIN 368
           VSSQVTLNSHLTEFKDHELVK KRH+DGQDCL+IPL  EALQKVLLEI+
Sbjct: 313 VSSQVTLNSHLTEFKDHELVKTKRHSDGQDCLHIPLTTEALQKVLLEIS 361