Miyakogusa Predicted Gene

Lj0g3v0150289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150289.1 tr|C1EGE6|C1EGE6_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_103805,44.35,1e-18,seg,NULL; PAN_4,NULL,CUFF.9220.1
         (333 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g019780.1 | plant/F17M5-140 protein | HC | chr1:6024487-60...   501   e-142
Medtr3g101480.1 | plant/F17M5-140 protein | HC | chr3:46708723-4...   381   e-106

>Medtr1g019780.1 | plant/F17M5-140 protein | HC |
           chr1:6024487-6031917 | 20130731
          Length = 339

 Score =  501 bits (1290), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/338 (72%), Positives = 266/338 (78%), Gaps = 5/338 (1%)

Query: 1   MARGEWGAQR-----GKWICSYKKITLVVCFFNIAVALFCLRSLYASLYIYSGSVGRNIV 55
           MAR EWG Q      GKW+CSYKKIT++VC FNIA+AL+CLRSLYASLYIYSGSV RNIV
Sbjct: 2   MARSEWGIQLQSRGGGKWVCSYKKITILVCLFNIAIALYCLRSLYASLYIYSGSVSRNIV 61

Query: 56  VYRPDQIRKMEESIQIRKSHKPVELIKWVEALGEEFSRDNVEVELPQHLKQKIVDEVLQR 115
           VY+PDQIRKMEES +IR S+KPV+L+K V+ L  EFS  N EVELPQHLKQKI+DEVLQR
Sbjct: 62  VYKPDQIRKMEESNRIRTSYKPVKLMKLVKELEGEFSIQNTEVELPQHLKQKIIDEVLQR 121

Query: 116 LGXXXXXXXXXXXXQVIVKERETVVNWRKEKLEEVKLAVTGGASNSTISHEEAGMLVRAL 175
           L             Q I  ER+ V NWRKEKLEEVKL   GG SNSTISHEEAGMLV+AL
Sbjct: 122 LVSLNSRSNNGSHSQGIAMERDAVENWRKEKLEEVKLVSAGGISNSTISHEEAGMLVKAL 181

Query: 176 ESDWGALSEELGLWIPVEVANEVHDDKXXXXXXXXXXXXXXXXXXXXCKTELHTDYGGTA 235
           ESDW  L+EE+GLWIPVEV N  H+DK                    CK ELHTDY G+A
Sbjct: 182 ESDWAVLAEEIGLWIPVEVVNVEHNDKPDGVEDLEEEVLPGRALPPECKPELHTDYDGSA 241

Query: 236 VRWGLTHHKDSAADCCQACLDHAKRAKEGDKKCNIWVYCPSEFGCHSPDIYQHKHQECWL 295
           VRWGLTHHKDSAADCCQACLDHAKRAKEG+KKCNIWVYCPSEFGCHSPDIYQHKH ECWL
Sbjct: 242 VRWGLTHHKDSAADCCQACLDHAKRAKEGEKKCNIWVYCPSEFGCHSPDIYQHKHMECWL 301

Query: 296 KYDEKPKLNFKDRYPEWYRNSHPSAPVIVPWAAGVVGA 333
           KY EKPKLNFKDRYPEWYRNS PSAPVIVPWA+GVV A
Sbjct: 302 KYAEKPKLNFKDRYPEWYRNSRPSAPVIVPWASGVVAA 339


>Medtr3g101480.1 | plant/F17M5-140 protein | HC |
           chr3:46708723-46705831 | 20130731
          Length = 322

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/313 (62%), Positives = 225/313 (71%), Gaps = 8/313 (2%)

Query: 10  RGKWICSYKKITLVVCFFNIA-VALFCLRSLYASLYI-YSGSVGRNIVVYRPDQIRKMEE 67
           RGK++CS+   TL +C FNIA VALF  RSLY+SL I ++      +V Y PDQI KMEE
Sbjct: 3   RGKYLCSFNNTTLFLCLFNIAIVALFVFRSLYSSLSIHFAEVSSDVVVSYSPDQIHKMEE 62

Query: 68  SIQIRKSHKPVELIKWVEALGEEFSRDNVEVELPQHLKQKIVDEVLQRLGXXXXXXXXXX 127
           S+ IR ++KPVELI  V+ L  EF R+N+ VELP++LKQKIVDE+L  L           
Sbjct: 63  SVHIRMAYKPVELINLVKVLEGEFLRENLAVELPRYLKQKIVDEILHTLRSLNSSSIN-- 120

Query: 128 XXQVIVKERETVVNWRKEKLEEVKLAVTGGASNSTISHEEAGMLVRALESDWGALSEELG 187
               I KERE V +WRKEKL+EVKLA   G SNSTI  EEAG+LVRALESDW  L EE+G
Sbjct: 121 ----IAKEREVVESWRKEKLKEVKLAHVKGTSNSTIPGEEAGLLVRALESDWDLLCEEVG 176

Query: 188 LWIPVEVANEVHDDKXXXXXXXXXXXXXXXXXXXXCKTELHTDYGGTAVRWGLTHHKDSA 247
           LWIP ++ NE HDDK                    C  E HTDY GTAVRWGLTHHKDSA
Sbjct: 177 LWIPAQIVNEEHDDKPEGAEEFDEEILPGRPLPPECNAEHHTDYDGTAVRWGLTHHKDSA 236

Query: 248 ADCCQACLDHAKRAKEGDKKCNIWVYCPSEFGCHSPDIYQHKHQECWLKYDEKPKLNFKD 307
           ADCCQACLDHA+ AKEG  KCNIWVYCP+EFGCHSPDIY+HKH+ECWLKYDEKP+LNFKD
Sbjct: 237 ADCCQACLDHARHAKEGVMKCNIWVYCPNEFGCHSPDIYEHKHRECWLKYDEKPQLNFKD 296

Query: 308 RYPEWYRNSHPSA 320
           +YPE YRNS+PSA
Sbjct: 297 KYPESYRNSYPSA 309