Miyakogusa Predicted Gene

Lj0g3v0149999.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149999.3 tr|F2CUH7|F2CUH7_HORVD DNA-directed RNA
polymerase OS=Hordeum vulgare var. distichum PE=2
SV=1,27.01,1e-17,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; DNA-DIRECTED RNA POLYMERASE,NULL;,CUFF.9209.3
         (421 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...   571   e-163
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...    74   2e-13

>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
           chr5:3060764-3075383 | 20130731
          Length = 1519

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/416 (68%), Positives = 327/416 (78%), Gaps = 3/416 (0%)

Query: 9   MDDNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTT 68
           MDD D    H +PS +I AIKF+VLTGEDI  ISALEI A GQV CSDLGLPNSS  CTT
Sbjct: 1   MDDEDLATVHKVPSALIKAIKFEVLTGEDIEKISALEINAPGQVTCSDLGLPNSSYGCTT 60

Query: 69  CGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVK-FLSV 127
           CG+ D+K CEGHFGAIKFPF+I+HPYF++E AEIL KICPACKSIR ++ +K  K  L  
Sbjct: 61  CGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQEIRVKRAKSLLGY 120

Query: 128 DKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTA-SKKKTLGQRLAADYW 186
           + +   CKYC G  MGRYP MKFRVS N+  R   II E+ND + +KK+ LG+ L ADYW
Sbjct: 121 NNQPKGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYW 180

Query: 187 DFIPNGSEEEESLVNRR-LSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRV 245
           DFI    ++EE+ VNR+ LS  QV +LLS VDP+FIEK++P   L+ L+ F V PN HRV
Sbjct: 181 DFILGDVQQEENHVNRKVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRV 240

Query: 246 TEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTE 305
           TE  HR S G  LSFD+RTRACKKLVDFRG A ELSS V++ L  SK+NPD+TP N+FTE
Sbjct: 241 TEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDRTPVNIFTE 300

Query: 306 LQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVS 365
           LQQRKVGENACNSSGLRWMKDVVLGKRNDC+FRTVVVGDPDL LSEIG+PCQIAE+LQVS
Sbjct: 301 LQQRKVGENACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVS 360

Query: 366 VYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGD 421
            YVNR+N++NLL CCELRLLEKG   V R G PVVLYKK+DLQIGD+ YRPL DGD
Sbjct: 361 EYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGD 416


>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
           chr8:14459096-14475944 | 20130731
          Length = 2010

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 170/422 (40%), Gaps = 44/422 (10%)

Query: 23  GVITAIKFDVLTGEDIRT--ISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGH 80
           G +  I+F + T  +I T  IS  +I  A Q+    LGLP     C +CGT++   CEGH
Sbjct: 34  GKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESCGTSEAGKCEGH 93

Query: 81  FGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGI 140
           FG I+ P  I HP  ++E  +IL+ +C +C  ++   +      L+  + L+ C  C  +
Sbjct: 94  FGYIELPVPIYHPSHVTELKKILSLVCLSCLRLKKTKVPSSSSGLA-QRLLSPC--CEDV 150

Query: 141 SMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESLV 200
           +  +    + + +      + ++        SK K     +   +W F+           
Sbjct: 151 NAAQVSIREVKTADGACYLALKV--------SKSK-----MHDGFWTFLEKYGYRYGGDH 197

Query: 201 NRRLSLSQVHHLLSDVDPDFIEK-----YVPRKSLLDLNYFPVTPNGHRVTEFSHRP--- 252
            R L   +   ++  +  +  +K     Y P+   + L Y PV PN   V   S      
Sbjct: 198 TRALLPCEAMEIIKRLPQETKKKLAGKGYFPQDGYI-LKYLPVPPNCLSVPVVSDGVSIM 256

Query: 253 SNGPKLSFDDR-TRACKKLVDFRGPAVELSSHVINSLSLSKL--------NPDKTPSNMF 303
           S+ P L+   +  R  + +   R       SH + +  L  +           K   ++ 
Sbjct: 257 SSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIE 316

Query: 304 TELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQ 363
           T     K   ++   + L  M+ + + K +  S R V+ GD    ++E+G+P ++A+ + 
Sbjct: 317 THYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRIT 376

Query: 364 VSVYVNRENKKNLLDCCE----LRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTD 419
               V+  N   L    +    L   E       R+G     Y    L+ G +++R + D
Sbjct: 377 FEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTY----LKPGQIVHRRIMD 432

Query: 420 GD 421
           GD
Sbjct: 433 GD 434