Miyakogusa Predicted Gene

Lj0g3v0149989.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149989.2 tr|G7KER5|G7KER5_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_5g011000 PE=3
SV=1,72.8,0,seg,NULL; DNA-DIRECTED RNA POLYMERASE,NULL; beta and
beta-prime subunits of DNA dependent RNA-polyme,CUFF.9202.2
         (1048 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...  1574   0.0  
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...   183   7e-46
Medtr5g023020.1 | DNA-directed RNA polymerase | HC | chr5:913015...   103   7e-22
Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC | c...    80   9e-15
Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC | c...    79   2e-14
Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC | c...    70   9e-12
Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC | c...    68   5e-11
Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 | 20...    66   2e-10
Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC | c...    65   3e-10
Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 | 20...    58   4e-08

>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 1574 bits (4075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1046 (72%), Positives = 878/1046 (83%), Gaps = 6/1046 (0%)

Query: 1    MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
            MI+L+VRVLPISSVVSINP+CCSPLRGDFDGDCLHGYIPQSV ARVELNELVALDRQLIN
Sbjct: 431  MIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLIN 490

Query: 61   GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSL 120
            GQSG NLLSLSQDSLTAA++L+EDGV  N+Y++QQL+MLC+K+LT P +I KAPS N   
Sbjct: 491  GQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSP-AIFKAPSSNTPF 549

Query: 121  WSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKT 180
            WSGKQLFSMLLPS FDY+FP N V V DGEL S  ESSGWLRDSE N+FQ LVE FQ K 
Sbjct: 550  WSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKI 609

Query: 181  LNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLL 240
            L++L+ AQK LCEWLSMTGF              AR+NMMEEISYGL+ AEQACDFNQLL
Sbjct: 610  LDVLHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLL 669

Query: 241  VDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYAS 300
            VDHY DFLS S ++++   ++D+D LN+E+ ISAA S+ SVDAFRH+FRNIQSL DK+A 
Sbjct: 670  VDHYSDFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHAC 729

Query: 301  KGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPM 360
            K N+FL MFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYR+PRELSCA WNS+KGL+SM M
Sbjct: 730  KDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEM 789

Query: 361  FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFM 420
             S+TL+  Q YI HAVVESSFLTGLNPLECF HSV NRDSSFSDNADLPGTLTRRLMFFM
Sbjct: 790  SSDTLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFM 849

Query: 421  RDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYS 480
            RD+Y AYDGTVRNLYGNQLIQFSYD ++DSSCDS F+E  +GGEPVGALSACA+SEAAYS
Sbjct: 850  RDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYS 909

Query: 481  ALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYL 540
            AL QPISLLE SPLLNLKNVLECGSRKK GDQTVSLFLS+K+GKQR GFEYAALEVKNYL
Sbjct: 910  ALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYL 969

Query: 541  ERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYES 600
            ER MFS+IVSTVMI+FTPQ  S   ++PWVCHFHLDKE V RRKL VHS+I+SLY++Y+S
Sbjct: 970  ERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDS 1029

Query: 601  LTKESKVTFPNLKISSNRKC----SKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAV 656
              +ESKV  P+LKISS + C    + EGG  S+  EK+  DCI+V +VE S++S +L++V
Sbjct: 1030 FRRESKVILPSLKISSKKWCVDYKANEGGETSVGNEKDGEDCITVAVVEDSKNSVQLDSV 1089

Query: 657  RDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWG 716
            R  +IPFLL T IKGFLEIKKVDILW +  KV+ SY GS+GELYLRVTMSS  D+G FWG
Sbjct: 1090 RKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRVTMSSGNDNGTFWG 1149

Query: 717  VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
             LINHCHRIMP+IDWTRSHPDNIHHFCSA+GIDAG Q++ H+L+SAT++TGKSILPKHL 
Sbjct: 1150 RLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSATSDTGKSILPKHLR 1209

Query: 777  LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGC 836
            LVANSLSASGEFVGLNAKG+ RQRKHASVSSPFVQACFSNPG+SF+KAAKSG++D+LQG 
Sbjct: 1210 LVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLKAAKSGIVDNLQGN 1269

Query: 837  LDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYHNRSS 896
            LDALAWG C+ MGT GQFDI++SEKVEE  +S DVY LL  +F+Q++ +++IP     SS
Sbjct: 1270 LDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSFNQMDQEINIPQSRKYSS 1329

Query: 897  NKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVISDHDK 956
             KC S+F  KNGGY  KE KQ KS +RNF+T NDIQ+L F++R IL++Y ID+ +S+ DK
Sbjct: 1330 GKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDARVILNKYQIDETLSETDK 1389

Query: 957  ITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRAL 1016
            +T+++VLHFHPR++EK G GP +IKVGWHP   DSRCF IIR D SVEDFSYRKCIL AL
Sbjct: 1390 LTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCILGAL 1449

Query: 1017 EIVDPGKFRIQKKKWLGQDDIVELKK 1042
            +I+DP K +IQ+ +W G  D+ E KK
Sbjct: 1450 DIIDPKKSKIQRNRWSGNGDM-EAKK 1474


>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
            chr8:14459096-14475944 | 20130731
          Length = 2010

 Score =  183 bits (465), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 226/505 (44%), Gaps = 42/505 (8%)

Query: 375  AVVESSFLTGLNPLECFAHSVANRD--SSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVR 432
             +++  F  GL+P E   HS+A R+     S     PGTL + LM  +RD+   YDGTVR
Sbjct: 769  GLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDGTVR 828

Query: 433  NLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETS 492
            N+  N +IQF Y      +    F      GEPVG L+A ++S  AY A+      L+ S
Sbjct: 829  NVCSNSIIQFEYGIQSGDAAQHLFP----AGEPVGVLAATSMSNPAYKAV------LDAS 878

Query: 493  PLLN-----LKNVLEC--GSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMF 545
            P  N     +K +L C    R +  D+ V L+L+D    + Y  E AA  V+N L +V  
Sbjct: 879  PSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSL 938

Query: 546  SDIVSTVMIMFTPQSSSLEIFNP--WVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTK 603
             D     ++ +  Q    +       VCH  L +  +   K+ +  V +    +  S ++
Sbjct: 939  KDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSR 998

Query: 604  ESKVT--FPNLKISSNRKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMI 661
            + K++  F   ++  +  CS                C++    +        + + D++ 
Sbjct: 999  KKKLSPFFKRTELIFSEFCS--------------APCVTFLWPDGVDLDQTTKVLADMIC 1044

Query: 662  PFLLGTVIKGFLEIKKVDILWSN---RSKVSNSYAGSSGELYLRVTMSSDG--DSGRFWG 716
            P LL T+I+G   I    I+W N    + V N    S+GEL L V +  +    SG  W 
Sbjct: 1045 PVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWR 1104

Query: 717  VLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLH 776
            ++++ C  ++ +ID  RS P  I       GI       +  LA++     K +L +HL 
Sbjct: 1105 IVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLI 1164

Query: 777  LVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGC 836
            L+A+S++  G  VG N  G     +   +  PF  A    P   F +AA+    D L   
Sbjct: 1165 LLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFTPRKCFERAAEKHHSDSLSSI 1224

Query: 837  LDALAWGKCMSMGTSGQFDIMHSEK 861
            + + +WGK +++GT  +FDI+   K
Sbjct: 1225 VASCSWGKHVAVGTGSKFDIVWDPK 1249



 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 14  VVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQD 73
            V INPL C PL  DFDGDC+H + PQS+AA+ E+ EL ++++QL++  SG   L LS D
Sbjct: 461 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSAD 520

Query: 74  SLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPS 133
           SL +  ML++    L+     Q+ M     L      +   +  +S W+  Q+    LP 
Sbjct: 521 SLLSLKMLVK-SCFLDRVAANQMAMFLLLPLP--MPALLKATTGDSYWTSIQILQCALPF 577

Query: 134 NFD 136
           +FD
Sbjct: 578 SFD 580



 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 948  DQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFS 1007
            D + ++  K  +  V   HP K  K+G G   + V  H   +DSRC +++  D   EDFS
Sbjct: 1849 DPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFS 1908

Query: 1008 YRKCI 1012
            YRKC+
Sbjct: 1909 YRKCL 1913


>Medtr5g023020.1 | DNA-directed RNA polymerase | HC |
           chr5:9130153-9139413 | 20130731
          Length = 1834

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 194/465 (41%), Gaps = 71/465 (15%)

Query: 6   VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
           ++++P S+   +N    SP   DFDGD ++ ++PQS   R E+ EL+ + + +++ Q+ R
Sbjct: 473 IKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANR 531

Query: 66  NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC---DKKLTPPPSIIKAPSRNNSLWS 122
            ++ + QDSL     + +    ++      + M     D K+ P P+I+K       LW+
Sbjct: 532 PVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKV-PAPTILKP----EPLWT 586

Query: 123 GKQLFSMLLPSNFD---YS----------FPPNG--VSVSDGELTSSFESSGWLRDSECN 167
           GKQ+F++++P   +   YS            P    V +  GEL +       L     +
Sbjct: 587 GKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLCKKTLGTGTGS 646

Query: 168 IFQRLVERF-QDKTLNLLYDAQKVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYG 226
           +   + E    D     L   Q ++  WL    F              A  + ME I+  
Sbjct: 647 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAF------SIGIGDTIADASTMETINQT 700

Query: 227 LQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRH 286
           + +A+      QL+ +     L              MDS  +E  ++  L+    DA   
Sbjct: 701 ISQAKDKV--KQLIREAQEKKLEAE------PGRTMMDS--FENRVNQTLNRARDDA--- 747

Query: 287 MFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSC 346
                 +   K  S+ N    M  AGSKG+ + + Q + C+G Q+   +   R+P     
Sbjct: 748 -----GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFGFID 799

Query: 347 AAWNSEKGLNSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSD 404
                     ++P F+        Y P +   VE+S+L GL P E F H++  R+     
Sbjct: 800 ---------RTLPHFTK-----DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 845

Query: 405 NADL--PGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
                  G + RRL+  M D+   YDGTVRN  G+ +IQF Y  D
Sbjct: 846 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGED 889


>Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC |
            chr4:33799127-33783168 | 20130731
          Length = 1628

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 199/517 (38%), Gaps = 113/517 (21%)

Query: 6    VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
            VRVL     V ++   CS    DFDGD ++ + PQ   +R E   +V  + Q +   SG 
Sbjct: 548  VRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGD 607

Query: 66   NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTP------------------- 106
             + +L QD + +A +L +    L+  E  QL       +T                    
Sbjct: 608  PIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSES 667

Query: 107  -----PPSIIKAPSRNNSLWSGKQLFSMLL--------PSNFDYS--FPPNGVSVSDGEL 151
                 PP+I K       LW+GKQ+ S LL        P   + +   P +      GE+
Sbjct: 668  EMFLFPPAIFKP----EPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEI 723

Query: 152  TSSFESSGWLRDS--------ECNIFQRLVERFQDKTLNLLYDAQ--------------- 188
                + +   +D           ++ + +V++ Q     +++  Q               
Sbjct: 724  KKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSAL 783

Query: 189  -KVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDF 247
             ++   +L M GF             C  ++++ ++    +   Q     ++    + +F
Sbjct: 784  SRLFTNFLQMHGF------------TCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREF 831

Query: 248  LSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQS-----LVDKYASKG 302
            +   + +S+N+  I M  LN EK I +          R M  N+ S     ++ +  SKG
Sbjct: 832  I--GVMESENIDPITM-QLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKG 888

Query: 303  -------NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGL 355
                   N    M  +G+KG+++   Q S  LG Q    +   R+PR +S          
Sbjct: 889  SLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGK---RVPRMVSG--------- 936

Query: 356  NSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPG 410
             ++P F     S  C  P A   +   FLT L P E + H +A R+    D A      G
Sbjct: 937  KTLPCFP----SWDCS-PRAGGFIIDRFLTALRPQEYYFHCMAGRE-GLVDTAVKTSRSG 990

Query: 411  TLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
             L R LM  +  L   YD TVR+  G+ +IQF Y  D
Sbjct: 991  YLQRCLMKNLESLKVCYDHTVRDSDGS-IIQFHYGED 1026



 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 735  HPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAK 794
            + +++H    AYG++A ++  +  + +     G S+  +HL L+A+ ++ SG +  L   
Sbjct: 1508 YSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRS 1567

Query: 795  GIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQF 854
            GI      A  +SPFV+  +       ++AA+ G +D L+     +  G  + MGT G  
Sbjct: 1568 GI------ADSTSPFVKISYETASNFIVEAARHGQVDTLETPSSRICLGLPVKMGT-GCI 1620

Query: 855  DIMH 858
            D++ 
Sbjct: 1621 DLIQ 1624


>Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC |
            chr4:33799127-33783168 | 20130731
          Length = 1179

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 121/517 (23%), Positives = 199/517 (38%), Gaps = 113/517 (21%)

Query: 6    VRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGR 65
            VRVL     V ++   CS    DFDGD ++ + PQ   +R E   +V  + Q +   SG 
Sbjct: 548  VRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGD 607

Query: 66   NLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTP------------------- 106
             + +L QD + +A +L +    L+  E  QL       +T                    
Sbjct: 608  PIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSES 667

Query: 107  -----PPSIIKAPSRNNSLWSGKQLFSMLL--------PSNFDYS--FPPNGVSVSDGEL 151
                 PP+I K       LW+GKQ+ S LL        P   + +   P +      GE+
Sbjct: 668  EMFLFPPAIFKP----EPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEI 723

Query: 152  TSSFESSGWLRDS--------ECNIFQRLVERFQDKTLNLLYDAQ--------------- 188
                + +   +D           ++ + +V++ Q     +++  Q               
Sbjct: 724  KKHTKDTSRKKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSAL 783

Query: 189  -KVLCEWLSMTGFXXXXXXXXXXXXXCARENMMEEISYGLQEAEQACDFNQLLVDHYCDF 247
             ++   +L M GF             C  ++++ ++    +   Q     ++    + +F
Sbjct: 784  SRLFTNFLQMHGF------------TCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREF 831

Query: 248  LSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQS-----LVDKYASKG 302
            +   + +S+N+  I M  LN EK I +          R M  N+ S     ++ +  SKG
Sbjct: 832  I--GVMESENIDPITMQ-LNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKG 888

Query: 303  -------NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGL 355
                   N    M  +G+KG+++   Q S  LG Q    +   R+PR +S          
Sbjct: 889  SLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGK---RVPRMVSG--------- 936

Query: 356  NSMPMFSNTLKSIQCYIPHA--VVESSFLTGLNPLECFAHSVANRDSSFSDNA---DLPG 410
             ++P F     S  C  P A   +   FLT L P E + H +A R+    D A      G
Sbjct: 937  KTLPCFP----SWDCS-PRAGGFIIDRFLTALRPQEYYFHCMAGRE-GLVDTAVKTSRSG 990

Query: 411  TLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
             L R LM  +  L   YD TVR+  G+ +IQF Y  D
Sbjct: 991  YLQRCLMKNLESLKVCYDHTVRDSDGS-IIQFHYGED 1026


>Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC |
           chr4:22846383-22818964 | 20130731
          Length = 1379

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 15/138 (10%)

Query: 1   MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
           M+S   RV+P  ++   N   C+P   DFDGD ++ ++PQ+  AR E   L+ +   L  
Sbjct: 468 MMSHRARVMPWRTL-RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCT 526

Query: 61  GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC-------DKKLTPPPSIIKA 113
            ++G  L++ +QD LT+++++         Y+     ++C       D    P P+IIK 
Sbjct: 527 PKNGEILVASTQDFLTSSFLITRKDT---FYDRSSFSLICSYMGDGMDPIDLPTPAIIKP 583

Query: 114 PSRNNSLWSGKQLFSMLL 131
                 LWSGKQLFS+LL
Sbjct: 584 V----ELWSGKQLFSILL 597



 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 24/150 (16%)

Query: 303 NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNS--EKGLNSMPM 360
           N+ L M + GSKG+ + + Q   C+G Q               C A N   ++ L   P 
Sbjct: 774 NSPLIMSQCGSKGSPINICQMVACVGQQSVG-----------GCRATNGFIDRNLPHFPK 822

Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS---SFSDNADLPGTLTRRLM 417
            +NT  +         V+ SF TGL+  E F H++  R+    +    AD  G ++RRLM
Sbjct: 823 HANTPDA------KGFVKDSFFTGLSATEFFFHTMGGREGLVDTAVKTADT-GYMSRRLM 875

Query: 418 FFMRDLYQAYDGTVRNLYGNQLIQFSYDTD 447
             + DL+  YD TVR+  G+ ++QF Y  D
Sbjct: 876 KALEDLFLHYDYTVRDTNGS-IVQFCYGDD 904


>Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC |
           chr4:22876102-22852950 | 20130731
          Length = 1388

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 15/138 (10%)

Query: 1   MISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLIN 60
           M+    RV+P  ++   N   C+P   DFDGD ++ ++PQ+  AR E   L+ +   L  
Sbjct: 469 MMCHRARVMPWRTL-RFNESVCNPYNADFDGDEMNIHVPQTEEARTEALLLMTVQNNLCT 527

Query: 61  GQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLC-------DKKLTPPPSIIKA 113
            ++G  L++ +QD LT+++++         Y+     ++C       D    P P+IIK 
Sbjct: 528 PKNGEILVASTQDFLTSSFLITRKDT---FYDRSTFSLICSYMGDGMDPVDLPTPAIIKP 584

Query: 114 PSRNNSLWSGKQLFSMLL 131
                 LWSGKQLF++LL
Sbjct: 585 V----ELWSGKQLFNILL 598



 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 27/165 (16%)

Query: 303 NAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNS--EKGLNSMPM 360
           N+ L M + GSKG+ + + Q   C+G Q               C A N   ++ L   P 
Sbjct: 775 NSPLIMSQCGSKGSPINICQMVACVGQQSVG-----------GCRATNGFIDRNLPHFPK 823

Query: 361 FSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDS---SFSDNADLPGTLTRRLM 417
            +NT  +         V+ SF TGL+  E F H++  R+    +    AD  G ++RRLM
Sbjct: 824 KANTPDA------KGFVKDSFFTGLSATEFFFHTMGGREGLVDTAVKTADT-GYMSRRLM 876

Query: 418 FFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVG 462
             + DL+  YD TVR+     L+QF Y    D   D    EG  G
Sbjct: 877 KALEDLFLHYDYTVRDA-NCSLVQFCYG---DDGMDPAGMEGKNG 917


>Medtr3g101770.1 | DCL protein | HC | chr3:46852812-46861223 |
            20130731
          Length = 224

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)

Query: 948  DQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFS 1007
            D++  +H+K  + ++L FHP   +K+GCG   I VG+HP    SRC  I+R D  + DFS
Sbjct: 133  DRLSPEHEKTIVEKLLPFHPESQKKIGCGIDYITVGYHPNFDRSRCMFIVRQDGELVDFS 192

Query: 1008 YRKCI 1012
            Y KCI
Sbjct: 193  YWKCI 197


>Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC |
           chr8:27456109-27455340 | 20130731
          Length = 245

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 42/56 (75%)

Query: 9   LPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSG 64
           + +++ V INPL C PL  DFDGDC+H + PQS+AA+ E+ EL ++++QL++  SG
Sbjct: 168 ISMTTRVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSYSG 223


>Medtr3g102270.1 | DCL protein | HC | chr3:47131265-47137864 |
            20130731
          Length = 202

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 929  NDIQKLAFESRSIL--SRYSIDQVISDHDKITML-RVLHFHPRKNEKLGCGPADIKVGWH 985
            NDI+ +   ++ IL  S+Y     ++  D+ T++ ++L +HP   +K+GCG   I V  H
Sbjct: 91   NDIEPIIVLTKEILHSSKYMDGGTLTLEDEKTVVEKLLAYHPHSEDKIGCGLESIMVDRH 150

Query: 986  PVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPG 1022
            P  + SRC  ++R+D    DFSY+KC+   ++   P 
Sbjct: 151  PQFRHSRCLFVVRTDGGWIDFSYQKCLREYIKKKYPA 187