Miyakogusa Predicted Gene

Lj0g3v0149189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149189.1 Non Characterized Hit- tr|D6WB97|D6WB97_TRICA
Putative uncharacterized protein OS=Tribolium castaneu,46.73,3e-19,no
description,Peptidyl-tRNA hydrolase II domain; PTH2,Peptidyl-tRNA
hydrolase, PTH2; UNKNOWN PROTEI,CUFF.9140.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108900.1 | type 2 (PTH2)-like peptidyl-tRNA hydrolase | H...   260   7e-70

>Medtr3g108900.1 | type 2 (PTH2)-like peptidyl-tRNA hydrolase | HC |
           chr3:50330566-50326673 | 20130731
          Length = 206

 Score =  260 bits (664), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 139/188 (73%), Positives = 157/188 (83%), Gaps = 7/188 (3%)

Query: 3   TMACTFPSIRFFTPSSSYLS-SRVRVTLAHFHAASVSYRASGLTSSSMSQPA--DSDTLS 59
           +MA T P++R F PS SYL+ SR + ++   HAAS S + S L  +SMSQPA  DS  LS
Sbjct: 22  SMAYTIPTLRLFNPSGSYLAFSRTKFSVT-LHAASFSNKTSQLNRNSMSQPAATDSTNLS 80

Query: 60  TPIEAPSKPENADVLVQYVVLRRDLIDTWPLGSVVTQGCHASVSAIWSSKDDPLTVDYCS 119
           TP ++P   EN DV+VQYVVLRRDLIDTWPLGSVVTQGCHASVSA+W +KDDP+T+DYCS
Sbjct: 81  TPTDSP---ENVDVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWFNKDDPVTIDYCS 137

Query: 120 PDKIDSMHKVTLEVKGEPQIKNLSEKLTSGGIIHKLWIEQPENFPTCLATKPYPKSVVSP 179
           P+KIDSM KVTLEVKGE QIKNLSEKLTSGGIIHKLWIEQPEN PTCLATKPYPKS+VS 
Sbjct: 138 PEKIDSMRKVTLEVKGELQIKNLSEKLTSGGIIHKLWIEQPENIPTCLATKPYPKSIVSS 197

Query: 180 YFKKLKLC 187
           YFKKLKLC
Sbjct: 198 YFKKLKLC 205