Miyakogusa Predicted Gene

Lj0g3v0149169.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149169.1 Non Characterized Hit- tr|D8RKZ1|D8RKZ1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43,4e-18,Tim17,Mitochondrial inner membrane translocase subunit
Tim17/Tim22/Tim23/peroxisomal protein PMP24; ,CUFF.9146.1
         (146 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096920.1 | outer envelope pore protein | HC | chr2:414214...   189   8e-49
Medtr2g096900.1 | outer envelope pore protein | HC | chr2:414141...   179   6e-46
Medtr2g096920.2 | outer envelope pore protein | HC | chr2:414213...   149   1e-36
Medtr4g121900.1 | outer envelope pore protein | HC | chr4:503246...    62   2e-10
Medtr2g034550.1 | outer envelope pore protein | HC | chr2:132044...    62   2e-10

>Medtr2g096920.1 | outer envelope pore protein | HC |
           chr2:41421421-41417840 | 20130731
          Length = 146

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 102/146 (69%)

Query: 1   MPLXXXXXXXXXPKVDVAIDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGSISS 60
           MP          P+VDV IDMGNPFLNL VDGFLKIG         EDT+HI++KGS+SS
Sbjct: 1   MPWSRISGSVSSPQVDVVIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKGSVSS 60

Query: 61  NDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGD 120
           NDF+KTLKKMCKEGAYWG + G+YVG EYGVERIRG RDWKNAM+GGAVTGALVSA + +
Sbjct: 61  NDFEKTLKKMCKEGAYWGAIGGVYVGTEYGVERIRGTRDWKNAMIGGAVTGALVSAVNNN 120

Query: 121 KSDKXXXXXXXXXXXXXXXEFINYLT 146
           K DK               EFIN+ T
Sbjct: 121 KKDKIAVDAITGAAIATAAEFINHFT 146


>Medtr2g096900.1 | outer envelope pore protein | HC |
           chr2:41414166-41412292 | 20130731
          Length = 147

 Score =  179 bits (455), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 99/143 (69%)

Query: 1   MPLXXXXXXXXXPKVDVAIDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGSISS 60
           MP          PKVDV IDMGNP LNLTVDGFLKIG         EDTYHI++KGS+SS
Sbjct: 1   MPHSSISGSVSSPKVDVVIDMGNPLLNLTVDGFLKIGAVAATRALAEDTYHIVRKGSVSS 60

Query: 61  NDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGD 120
           +DF+KTLKK  KEGAYWG +AG+YVG EYGV+RIRG RDWKNA  GGAVTGALVSAAS +
Sbjct: 61  SDFEKTLKKTFKEGAYWGAIAGVYVGTEYGVQRIRGTRDWKNATFGGAVTGALVSAASNE 120

Query: 121 KSDKXXXXXXXXXXXXXXXEFIN 143
           K+DK               EFIN
Sbjct: 121 KADKIVIGAITGAAIATAAEFIN 143


>Medtr2g096920.2 | outer envelope pore protein | HC |
           chr2:41421394-41417840 | 20130731
          Length = 114

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 76/104 (73%)

Query: 1   MPLXXXXXXXXXPKVDVAIDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGSISS 60
           MP          P+VDV IDMGNPFLNL VDGFLKIG         EDT+HI++KGS+SS
Sbjct: 1   MPWSRISGSVSSPQVDVVIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKGSVSS 60

Query: 61  NDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAM 104
           NDF+KTLKKMCKEGAYWG + G+YVG EYGVERIRG RDW   +
Sbjct: 61  NDFEKTLKKMCKEGAYWGAIGGVYVGTEYGVERIRGTRDWLRVL 104


>Medtr4g121900.1 | outer envelope pore protein | HC |
           chr4:50324677-50326368 | 20130731
          Length = 179

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 26/132 (19%)

Query: 19  IDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHII------------------------- 53
            D G+P +N   + F+K            + Y  +                         
Sbjct: 25  FDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTVIEGTGIDNAGGMPPEISGAKKNRFH 84

Query: 54  -KKGSISSNDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGA 112
             +G  SS   +  +K   KE   WG  AGLY G+ YG++  RG  DWKN+ + GA+TGA
Sbjct: 85  GLRGETSSKSIEAMVKNTGKESFQWGLAAGLYSGLTYGMKEARGTHDWKNSAVAGAITGA 144

Query: 113 LVSAASGDKSDK 124
            ++  S + S +
Sbjct: 145 ALACTSDNTSHE 156


>Medtr2g034550.1 | outer envelope pore protein | HC |
           chr2:13204427-13202151 | 20130731
          Length = 182

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 27/123 (21%)

Query: 20  DMGNPFLNLTVDGFLKIGXXXXXXXXXEDTY------HIIKKGSISSNDFQKTLKKMC-- 71
           D+G+P LN   + F+K            + Y      H + KG +   D   T K+    
Sbjct: 28  DLGHPLLNRIAESFVKAAGIGAVQAVSREAYFTAIDGHKVDKGGVIPQDVSPTNKRRLPA 87

Query: 72  -------------------KEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGA 112
                              KE   WG  AG+Y G+ YG++  RG  DWKN+ + GA+TGA
Sbjct: 88  GLRGETSNKSLDAMVINTGKESLQWGVAAGIYSGLTYGLKEARGAHDWKNSAVAGAITGA 147

Query: 113 LVS 115
            ++
Sbjct: 148 TLA 150