Miyakogusa Predicted Gene

Lj0g3v0148479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0148479.1 Non Characterized Hit- tr|B9S9U5|B9S9U5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,40.49,9e-19,seg,NULL,CUFF.9084.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g058890.1 | transmembrane protein, putative | HC | chr3:23...   101   8e-22
Medtr5g095540.1 | transmembrane protein, putative | HC | chr5:41...    76   3e-14
Medtr5g095630.1 | transmembrane protein, putative | LC | chr5:41...    75   7e-14
Medtr2g026565.1 | transmembrane protein, putative | LC | chr2:96...    51   1e-06

>Medtr3g058890.1 | transmembrane protein, putative | HC |
          chr3:23506749-23507565 | 20130731
          Length = 221

 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 1  MDQVKSHMV----QSIKAHNFLIKLTXXXXXXXXXXXXXXXXXXMCFLHQFSFYFSSFPL 56
          M+Q+ SH +    +SIKA N+LIKLT                  + FLH F+FYFS+F L
Sbjct: 1  MNQLNSHRISFLSRSIKAQNYLIKLTPFLVSLSLITFIVSPSSLISFLHHFNFYFSTFSL 60

Query: 57 QLFTHTIDKNCMFLLCNGLLVFVGITR 83
          QLFTHTIDKNCMFL+CNGLLVFVGITR
Sbjct: 61 QLFTHTIDKNCMFLICNGLLVFVGITR 87



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 27/28 (96%)

Query: 212 ALSTEELNKKFDDFIRRMKEDLRIEAQR 239
            LSTEELNKKFDDFI++MK+DLRIEAQ+
Sbjct: 194 VLSTEELNKKFDDFIKKMKKDLRIEAQK 221


>Medtr5g095540.1 | transmembrane protein, putative | HC |
          chr5:41760015-41760830 | 20130731
          Length = 271

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 45/78 (57%)

Query: 6  SHMVQSIKAHNFLIKLTXXXXXXXXXXXXXXXXXXMCFLHQFSFYFSSFPLQLFTHTIDK 65
          S + Q +K H+ L+K T                    FLH F  YFS+ P QL+TH IDK
Sbjct: 13 STLTQGMKTHSHLMKFTQIFISLSVFCFIFSPSSLFVFLHYFKLYFSTLPFQLYTHNIDK 72

Query: 66 NCMFLLCNGLLVFVGITR 83
          N MFLLCNGLLVFVG+T+
Sbjct: 73 NSMFLLCNGLLVFVGLTK 90



 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 212 ALSTEELNKKFDDFIRRMKEDLRIEAQRHLVMV 244
            LSTEELNKKF+DFIR+MKEDLRI+A+RHL+MV
Sbjct: 239 VLSTEELNKKFEDFIRKMKEDLRIDARRHLIMV 271


>Medtr5g095630.1 | transmembrane protein, putative | LC |
           chr5:41794867-41795702 | 20130731
          Length = 250

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 6   SHMVQSIKAHNFLIKLTXXXXXXXXXXXXXXXXXXMCFLHQFSFYFSSFPLQLFTHTIDK 65
           S + Q +K H+ L+K T                     LH F  YFS+FP QL+TH IDK
Sbjct: 13  STLTQGMKTHSNLMKFTQIFISLSVFSFICSPSSLFVILHYFKLYFSTFPSQLYTHNIDK 72

Query: 66  NCMFLLCNGLLVFVGIT------RXXXXXXXXXXXXKYFEGGLQTPYSDVETNQPMLLE- 118
           N MFLLCNGLLVFVG+T                   K  E   ++   DVE N+P+L   
Sbjct: 73  NNMFLLCNGLLVFVGLTKSFSNSSSDDDDKPSNIEEKEEEICSRSHVLDVEVNEPLLERE 132

Query: 119 ---KTNDQDQQQ 127
              +TN+ D+  
Sbjct: 133 VEMRTNEADEHN 144



 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 212 ALSTEELNKKFDDFIRRMKEDLRIEAQRHLVMV 244
            LSTEELNKKF+DFIR+MKEDLRI+A+RHLVMV
Sbjct: 218 VLSTEELNKKFEDFIRKMKEDLRIDARRHLVMV 250


>Medtr2g026565.1 | transmembrane protein, putative | LC |
           chr2:9624331-9624990 | 20130731
          Length = 219

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 29/31 (93%)

Query: 214 STEELNKKFDDFIRRMKEDLRIEAQRHLVMV 244
           +TEELN+KF++FIR+MKE++RIEAQ HL+ V
Sbjct: 189 NTEELNRKFEEFIRKMKEEMRIEAQTHLIAV 219