Miyakogusa Predicted Gene

Lj0g3v0148359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0148359.1 Non Characterized Hit- tr|B9RWA4|B9RWA4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.18,3e-18,coiled-coil,NULL; seg,NULL,CUFF.9073.1
         (211 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077140.1 | hypothetical protein | HC | chr1:34414731-3441...   140   1e-33

>Medtr1g077140.1 | hypothetical protein | HC |
           chr1:34414731-34413774 | 20130731
          Length = 303

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 138/219 (63%), Gaps = 25/219 (11%)

Query: 1   MKKYVNTLRVVTHLIDGVNVNNKHDAMKTTRALVLLES-CNDIEKK-CKKSGLCLRRLML 58
           +  YV+TL++V HL+D  N + KH+ + T RA  LLES C  +E + CK  GL   + +L
Sbjct: 102 INNYVDTLKMVVHLVD--NGSAKHNKVATIRATELLESSCKSVENRSCK--GL---KNLL 154

Query: 59  RQKLFHDDHETEFSEIVTGSKAMALMGCRFLEQGLSFDCKSG-LPLIKKCPP----MFSF 113
           RQ+L H   ET  SEI+ GSKA+ LM  RFLE GLSFD KSG LP +K   P        
Sbjct: 155 RQRLCH--RETNISEIMCGSKAVTLMCLRFLEHGLSFDSKSGILPTMKLSQPTSTSWLRL 212

Query: 114 LLGLAEKAEGSA-VKKLHKRGSRCFVMSELQQTVAAARELXXXXXXXXXXXXIKSSVEGL 172
           LL L ++AE S   KKL KR S     S LQQT+ AAREL            ++S V+ L
Sbjct: 213 LLELTKQAEASVDEKKLQKRRS-----SLLQQTMDAARELRQQMKVEKE---MQSCVDRL 264

Query: 173 KRSCRGLEDELDFLEGRVKDLYKGLIDVRMALLGILSQA 211
           KR+C+ LEDE++ +EG+VKDLY+ LIDVRM LLGILSQA
Sbjct: 265 KRNCKELEDEIEDIEGKVKDLYRCLIDVRMTLLGILSQA 303