Miyakogusa Predicted Gene

Lj0g3v0147879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147879.1 Non Characterized Hit- tr|J3MB50|J3MB50_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB06G1,56.04,2e-19,Ran
BP2/NZF zinc finger-like,NULL; ZF_RANBP2_1,Zinc finger, RanBP2-type;
seg,NULL; ZF_RANBP2_2,Zinc ,GO025651.path2.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC ...   120   3e-28
Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC ...   103   4e-23
Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC ...   102   9e-23
Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC ...    77   3e-15
Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC ...    75   1e-14

>Medtr4g011190.1 | zinc finger (Ran-binding) family protein | HC |
          chr4:2646573-2643799 | 20130731
          Length = 147

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 63/93 (67%)

Query: 1  MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPG 60
          MSRPGDWNCRSCQH+NFQRR+SCQRCGDSKY                         VR G
Sbjct: 1  MSRPGDWNCRSCQHMNFQRRESCQRCGDSKYGERVDYGSVFGGIRGGSSFGLSGSDVRLG 60

Query: 61 DWYCAAANCGAHNFASRSSCFKCGAFKDDLVGG 93
          DWYC A NCGAHNFASR SCFKCGAFKDDL GG
Sbjct: 61 DWYCGAGNCGAHNFASRLSCFKCGAFKDDLAGG 93


>Medtr3g107610.2 | zinc finger (Ran-binding) family protein | HC |
          chr3:49625913-49625045 | 20130731
          Length = 175

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 61/101 (60%), Gaps = 7/101 (6%)

Query: 1  MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXX-----XXXXXXXXXXXXXXXXXXXXX 55
          MSRPGDWNCR+C HLNFQRR+SCQRCG+S+                              
Sbjct: 1  MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 56 XVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLVGGFSS 96
           VRPGDWYC   NCGAHNFASRSSCFKCGA KD  +  FSS
Sbjct: 61 DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKD--IDTFSS 99


>Medtr3g107610.1 | zinc finger (Ran-binding) family protein | HC |
          chr3:49625913-49624495 | 20130731
          Length = 170

 Score =  102 bits (254), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 57/93 (61%), Gaps = 5/93 (5%)

Query: 1  MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXX-----XXXXXXXXXXXXXXXXXXXXX 55
          MSRPGDWNCR+C HLNFQRR+SCQRCG+S+                              
Sbjct: 1  MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGP 60

Query: 56 XVRPGDWYCAAANCGAHNFASRSSCFKCGAFKD 88
           VRPGDWYC   NCGAHNFASRSSCFKCGA KD
Sbjct: 61 DVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKD 93


>Medtr4g113840.1 | zinc finger (Ran-binding) family protein | HC |
          chr4:46857090-46858933 | 20130731
          Length = 140

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 11/90 (12%)

Query: 5  GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
          GDW C +C+H+NF++R++CQ CG  KY                            GDW+C
Sbjct: 6  GDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTE-----------TLAGDWFC 54

Query: 65 AAANCGAHNFASRSSCFKCGAFKDDLVGGF 94
           + NCGAHN+ASRS+C++CGAFKD    G+
Sbjct: 55 TSMNCGAHNYASRSNCYRCGAFKDPYSSGY 84


>Medtr2g054750.1 | zinc finger (Ran-binding) family protein | HC |
          chr2:23383920-23382437 | 20130731
          Length = 128

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 11/85 (12%)

Query: 5  GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
          GDW C +CQH+NF++RD+CQ CG  K                             GDWYC
Sbjct: 6  GDWMCNACQHINFKKRDACQNCGYPK-----------IGGPDPETYRYNWTETLAGDWYC 54

Query: 65 AAANCGAHNFASRSSCFKCGAFKDD 89
          +  NCGAHN+ASR+SC++CGA K+D
Sbjct: 55 SGMNCGAHNYASRTSCYRCGALKND 79