Miyakogusa Predicted Gene

Lj0g3v0147699.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147699.1 tr|F2CQW9|F2CQW9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,47.87,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; DUF1421,Protein of unknown function
DUF14,NODE_31384_length_703_cov_162.046936.path2.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0130.1 | structural constituent of cell wall protein, ...   258   3e-69
Medtr2g090360.1 | structural constituent of cell wall protein, p...   242   2e-64
Medtr2g090360.2 | structural constituent of cell wall protein, p...   204   6e-53
Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain prot...    86   2e-17
Medtr6g004930.1 | DNA-binding protein, putative | HC | chr6:5063...    71   8e-13

>Medtr0004s0130.1 | structural constituent of cell wall protein,
           putative | HC | scaffold0004:37626-31693 | 20130731
          Length = 527

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 143/174 (82%), Gaps = 6/174 (3%)

Query: 1   MASGPSGLSNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPS---KDFHISRMTKAAA 57
           MASG SG  N    GFDF SDD+LCSYEDF+ +DS++ N+ DPS   KDFH SR+ + + 
Sbjct: 1   MASGSSGRGN---PGFDFASDDILCSYEDFSNRDSNSNNHNDPSNSTKDFHKSRVARTSV 57

Query: 58  LPATAYGSPEGSLGQDVIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEM 117
            PA AY  PE SL QDVIATVEKS+K Y+DNLMRFLEGI SRLSQLELYCYNLDKSIGE+
Sbjct: 58  FPAPAYNPPEDSLSQDVIATVEKSMKKYADNLMRFLEGISSRLSQLELYCYNLDKSIGEI 117

Query: 118 RSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQKE 171
           RSDLN DH + DSKLKS+EKHVQEVHRSVQIL+DKQELA+ QKELAKLQL QKE
Sbjct: 118 RSDLNRDHGDQDSKLKSLEKHVQEVHRSVQILRDKQELAETQKELAKLQLAQKE 171


>Medtr2g090360.1 | structural constituent of cell wall protein,
           putative | LC | chr2:38464803-38468087 | 20130731
          Length = 500

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 143/171 (83%), Gaps = 4/171 (2%)

Query: 1   MASGPSGLSNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPSKDFHISRMTKAAALPA 60
           MAS PS L N +S+G     DD+ CSY+D+T +DSS G +ID +KDFHISRM K +  PA
Sbjct: 1   MASEPSFLRNYNSEG---HKDDIFCSYDDYTNEDSSCGTHIDSNKDFHISRMVKTSTFPA 57

Query: 61  TAYGSPEGSLGQDVIAT-VEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMRS 119
           TAY SPE SL Q+VIAT VEKS+KT +D+LMRFLEGI SRLSQLELYCYN+DKSIGE++S
Sbjct: 58  TAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRLSQLELYCYNIDKSIGELKS 117

Query: 120 DLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQK 170
           +L SDHEEADSKLKS++KH+QEVHRSVQIL+DKQEL + QKELAKLQL +K
Sbjct: 118 ELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQKELAKLQLARK 168


>Medtr2g090360.2 | structural constituent of cell wall protein,
           putative | LC | chr2:38466128-38468084 | 20130731
          Length = 480

 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 113/127 (88%), Gaps = 1/127 (0%)

Query: 45  KDFHISRMTKAAALPATAYGSPEGSLGQDVIAT-VEKSIKTYSDNLMRFLEGIGSRLSQL 103
           +DFHISRM K +  PATAY SPE SL Q+VIAT VEKS+KT +D+LMRFLEGI SRLSQL
Sbjct: 22  QDFHISRMVKTSTFPATAYNSPEVSLSQEVIATTVEKSMKTCTDDLMRFLEGISSRLSQL 81

Query: 104 ELYCYNLDKSIGEMRSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELA 163
           ELYCYN+DKSIGE++S+L SDHEEADSKLKS++KH+QEVHRSVQIL+DKQEL + QKELA
Sbjct: 82  ELYCYNIDKSIGELKSELTSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELVETQKELA 141

Query: 164 KLQLVQK 170
           KLQL +K
Sbjct: 142 KLQLARK 148


>Medtr2g090365.1 | PHD finger and bromo-adjacent-like domain
          protein, putative | HC | chr2:38471494-38475361 |
          20130731
          Length = 453

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 58/73 (79%), Gaps = 2/73 (2%)

Query: 24 LCSYED-FTEQDSSNGNNIDPSKDFHISRMTKAAALPATAYGSPEGSLGQDVIAT-VEKS 81
           CSY+D FT +D S+  +ID SKDF+IS++ K + +PATAY SPE SL QDVIAT VEKS
Sbjct: 13 FCSYDDAFTNEDFSSVTHIDYSKDFNISKIAKTSIVPATAYNSPEVSLSQDVIATIVEKS 72

Query: 82 IKTYSDNLMRFLE 94
          +KT +DNLM+FL+
Sbjct: 73 MKTCTDNLMQFLD 85


>Medtr6g004930.1 | DNA-binding protein, putative | HC |
           chr6:506365-512095 | 20130731
          Length = 565

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 62/94 (65%)

Query: 74  VIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMRSDLNSDHEEADSKLK 133
           ++  +++++K + DNL   LEG+ +RL+Q+E   ++L+ S+ +++  + ++H   D KL+
Sbjct: 126 ILLEIDRTMKKHMDNLHHVLEGVSARLTQVETRTHHLESSMDDLKVSVGNNHGITDGKLR 185

Query: 134 SIEKHVQEVHRSVQILKDKQELADAQKELAKLQL 167
            +E  + EV   V  +KDKQ++  AQ +LAKLQ+
Sbjct: 186 LLENILSEVQTGVHDIKDKQDIMQAQLQLAKLQV 219