Miyakogusa Predicted Gene

Lj0g3v0147089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147089.1 Non Characterized Hit- tr|I1LAL9|I1LAL9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22529
PE,91.89,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
FrhB_FdhB_C,Coenzyme F420 hydrogenase/dehydrogenase,CUFF.8992.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g046250.1 | coenzyme F420-reducing hydrogenase, beta subun...   789   0.0  

>Medtr1g046250.1 | coenzyme F420-reducing hydrogenase, beta subunit
           | HC | chr1:17425333-17417405 | 20130731
          Length = 448

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/404 (91%), Positives = 390/404 (96%)

Query: 30  RQDWRKRSKAIPPGGTYPAKDHCSHCGLCDTYYVAHVKNACAFLGDGMSRIERLEPVVHG 89
           +QDWRKRSK IPPGGTYPAKD CS CGLCDTYY+AHVKNACAFLGDGMS+IE+LEPVVHG
Sbjct: 26  KQDWRKRSKPIPPGGTYPAKDQCSRCGLCDTYYIAHVKNACAFLGDGMSKIEKLEPVVHG 85

Query: 90  RGRKTDTLDETYLGVHEELLYARKLKPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDP 149
           RGRKTDTLDETYLGV EELLYARKL PVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDP
Sbjct: 86  RGRKTDTLDETYLGVFEELLYARKLNPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDP 145

Query: 150 DDRFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 209
           DDRFAPRPVLARTPEEV+AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV
Sbjct: 146 DDRFAPRPVLARTPEEVMAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 205

Query: 210 EHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASHSPETVLHYEFMQDYQVQLKHLDGHIE 269
           EHHLNL+KLYVLGTNCVDNGTREGLDKFL AAS SPETVLHYEFMQDY+V LKHLDG IE
Sbjct: 206 EHHLNLDKLYVLGTNCVDNGTREGLDKFLNAASDSPETVLHYEFMQDYKVHLKHLDGRIE 265

Query: 270 EVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYSGISMTQHPQYVTVRNE 329
           EVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKYSGISMTQHPQY+TVRNE
Sbjct: 266 EVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYSGISMTQHPQYITVRNE 325

Query: 330 RGREMLSLVKNLLDITPTTSAGDRRPYVMETVKADDNAKFGRGPAQPAPRFIGNLIAFIL 389
           RGREM+SLVKNLL+ITPT ++GDRRP+VMETVKADD AKFGRGP QPAP+F+GNLIAF+L
Sbjct: 326 RGREMMSLVKNLLEITPTVNSGDRRPFVMETVKADDKAKFGRGPPQPAPKFVGNLIAFLL 385

Query: 390 NLIGPKGLEFARYSLDYHTIRNYLYVNRKWGKERADKHIPTYAK 433
           NL+GPKG+EFARYSLDYHTIRNYLYVNR WGKERAD+H+P+YAK
Sbjct: 386 NLVGPKGIEFARYSLDYHTIRNYLYVNRLWGKERADRHMPSYAK 429