Miyakogusa Predicted Gene

Lj0g3v0146989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146989.1 Non Characterized Hit- tr|D8S066|D8S066_SELML
Putative uncharacterized protein OS=Selaginella
moelle,34.74,5e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin
Nup85-l,gene.g11122.t1.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g006690.1 | Nup85 nucleoporin protein | HC | chr1:110219-9...   255   2e-68
Medtr1g006690.2 | Nup85 nucleoporin protein | HC | chr1:108027-9...    55   3e-08

>Medtr1g006690.1 | Nup85 nucleoporin protein | HC |
           chr1:110219-98846 | 20130731
          Length = 710

 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/248 (55%), Positives = 156/248 (62%), Gaps = 55/248 (22%)

Query: 1   MPSDTVGNGVLVPFSGE-GSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSAT 59
           M  +TV NG L+PFSGE  +DS+A+YPL+H L+ P+SR+AISWSRGNSLRVSLFAEPS T
Sbjct: 1   MSPNTVDNGTLIPFSGETNNDSLAIYPLHHTLTRPVSRLAISWSRGNSLRVSLFAEPSQT 60

Query: 60  SPDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXXXXXXXXXXXXXXYH 119
           S      GAKV+EVKL G DPEI D++WRRIAYGSV PFALLQ               Y 
Sbjct: 61  S--DAGDGAKVIEVKLGGGDPEIDDADWRRIAYGSVAPFALLQSRRSAISNMSKSPSTYQ 118

Query: 120 VDWWEHVLEYSKDIASLLGGPK-------------------------------------- 141
           +DWWEHVL+YSK+I SLL GPK                                      
Sbjct: 119 LDWWEHVLQYSKEITSLLAGPKLGPSPIIDDPNEIVKKNEEPTCLKAAWELMEIFYVDKQ 178

Query: 142 --------------DFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSSALSV 187
                         D+DSLFTST ETIHGKLV+FQ +LVNIQVIEDDPRYWEVMSSALSV
Sbjct: 179 SQAWLPERLVDWLADYDSLFTSTQETIHGKLVDFQNDLVNIQVIEDDPRYWEVMSSALSV 238

Query: 188 GWLDIVVS 195
           GWLDIVV 
Sbjct: 239 GWLDIVVK 246


>Medtr1g006690.2 | Nup85 nucleoporin protein | HC |
           chr1:108027-98846 | 20130731
          Length = 526

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 170 VIEDDPRYWEVMSSALSVGWLDIVVS 195
           VIEDDPRYWEVMSSALSVGWLDIVV 
Sbjct: 37  VIEDDPRYWEVMSSALSVGWLDIVVK 62