Miyakogusa Predicted Gene

Lj0g3v0146979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146979.1 Non Characterized Hit- tr|I1MHT6|I1MHT6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56638 PE,86.77,0,Middle
domain of eukaryotic initiation facto,MIF4G-like, type 3; SUBFAMILY
NOT NAMED,NULL; NONSENSE-,NODE_45833_length_4484_cov_72.079170.path2.1
         (1208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g048630.1 | regulator of nonsense transcripts-like protein...  1158   0.0  

>Medtr2g048630.1 | regulator of nonsense transcripts-like protein | HC
            | chr2:21440873-21453740 | 20130731
          Length = 1275

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/687 (82%), Positives = 594/687 (86%), Gaps = 3/687 (0%)

Query: 484  LRSLEGTNLDALLQRLPGCVSRDLIDQLTVGFCYLHSKSNRKKLVGALFSVPMTSLELLP 543
            LRSLEGTNLDALLQRLPGCVSRDLIDQLTV FCYL+SKSNRKKLV ALFSVP TSLELL 
Sbjct: 467  LRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLA 526

Query: 544  YYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAP 603
            YYSRMVATLSTCMKDVSS+LLQMLEEEFNFLINKKDQMNIETKI+NIRFIGELCKFKIAP
Sbjct: 527  YYSRMVATLSTCMKDVSSLLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAP 586

Query: 604  AGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNL 663
            AGLVFSCLKACLDDF+HHNIDVACNLLETCGRFLYRSPETSIRM NMLEILMRLKNVKNL
Sbjct: 587  AGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNL 646

Query: 664  DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPW 723
            DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDK+TIEHVLRQLRKLPW
Sbjct: 647  DPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKTTIEHVLRQLRKLPW 706

Query: 724  SECEPYFLNCFMNVYEGNSGQIHLIASLAAGLSRYYDEFAVAIVDEVLEEIRIGLELNDY 783
            S+CE Y L CFM V++G  GQIHL+ASLAAGLSRY+DEFAVAIVDEVLEEIRIGLELNDY
Sbjct: 707  SDCELYLLKCFMKVHKGKYGQIHLVASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDY 766

Query: 784  GMQQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIRLII 843
            GMQQRRVA MRFLGELYNYKHADSSVIFETLYLI+V+GHGTPEQDVLDPPEDFFRIRLII
Sbjct: 767  GMQQRRVANMRFLGELYNYKHADSSVIFETLYLIIVFGHGTPEQDVLDPPEDFFRIRLII 826

Query: 844  TLLETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVRYSS 903
            TLLETCGHYFDHGSSK+KLDRFL+HFQRYILSKGALPLDVEFDLQDLF DLRP+MVRY+S
Sbjct: 827  TLLETCGHYFDHGSSKKKLDRFLMHFQRYILSKGALPLDVEFDLQDLFADLRPSMVRYTS 886

Query: 904  IXXXXXXXXXXXXHDRIVSADKASGEKQS--EKPPRRTTSSMVVGNGQSIDNGAEDNGVQ 961
            +            HDRIVS DKAS EK S  +KP  R+TS+ +V NGQ+ DNG E+NGVQ
Sbjct: 887  VDEVNAALVELEEHDRIVSTDKASSEKHSHTDKPLSRSTSTTMVSNGQNNDNGIEENGVQ 946

Query: 962  DDVNDGEADSGSDVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVRQK 1021
            D+VN+GE DSGSDVI                                       VHVRQK
Sbjct: 947  DNVNEGEHDSGSDVI-DAEGHDDEELDEENHDDGGETEDDDEDEDGPASDDEDEVHVRQK 1005

Query: 1022 VTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG 1081
            VTEVDPLEEA FDQELKAV+QESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG
Sbjct: 1006 VTEVDPLEEADFDQELKAVVQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGG 1065

Query: 1082 ESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSLVQSTXXXXXXXXXXXXDI 1141
            ESGDEALDEDT  +KEVQVKVLVKRGNKQQTKQMYIP +SSLVQST            DI
Sbjct: 1066 ESGDEALDEDTGVSKEVQVKVLVKRGNKQQTKQMYIPSDSSLVQSTKQKEAAELQEKEDI 1125

Query: 1142 KRLVLEYNDREEEELNGLGTQPTNWMQ 1168
            KRL+LEYNDREEEELNGLG QP+NWMQ
Sbjct: 1126 KRLILEYNDREEEELNGLGAQPSNWMQ 1152



 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/428 (84%), Positives = 390/428 (91%), Gaps = 1/428 (0%)

Query: 1   MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDS 60
           MDQ+EDECR  GE+N+KQDDEEAVAHLEEIKKSIEAK+ALRQ+NLNP+RPD+GF RTLDS
Sbjct: 1   MDQNEDECRNEGETNNKQDDEEAVAHLEEIKKSIEAKMALRQTNLNPERPDTGFFRTLDS 60

Query: 61  SIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQIW 120
           SIKRNTAVIKKLKQINEE RE+LMD+LR+VN+SKFVSEAVAAIC+AKLRSSDIQAAVQI 
Sbjct: 61  SIKRNTAVIKKLKQINEEQRESLMDDLRSVNLSKFVSEAVAAICEAKLRSSDIQAAVQIC 120

Query: 121 SLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNXXXXXXXXXXXXXXXXFFVGVIED 180
           SLLHQRYKDF P+LIQGLLK+FSPGK GDE+D+DKN                FFVGVIED
Sbjct: 121 SLLHQRYKDFVPTLIQGLLKVFSPGKSGDETDSDKNLKAMKKRSSLKLLLELFFVGVIED 180

Query: 181 GAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAI 240
           G IFI+IIKDLTSVEQLKDR+ATQTSLTLLSSFARQGRIFLGLSV GPEIHEEF KGL I
Sbjct: 181 GGIFISIIKDLTSVEQLKDREATQTSLTLLSSFARQGRIFLGLSVTGPEIHEEFMKGLNI 240

Query: 241 TADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRK 300
           TADQKKV+RKACY+FYD AAELLQSEHSSLR+MEHENSKILNAKGELSEEN++SYEKLRK
Sbjct: 241 TADQKKVIRKACYSFYDTAAELLQSEHSSLRLMEHENSKILNAKGELSEENLSSYEKLRK 300

Query: 301 SYDHLYRNVSSLAEALDMQPPVMPADGHTTRVTSGEEGISSASGKDSSVVEPIWDDEDTR 360
           SYDHLYRNVSSLAEALDMQPPVMP DGHTTRVTSGEE +SSA+GKDSSVVEPIWDDEDTR
Sbjct: 301 SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAVSSAAGKDSSVVEPIWDDEDTR 360

Query: 361 AFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPESDKGQ-TTRESGEVSTDP 419
           AFYECLPDLRAFVPAVLLGETEPK NEQSVK QDQSTEILPESDK Q  T +SGEVST+ 
Sbjct: 361 AFYECLPDLRAFVPAVLLGETEPKVNEQSVKGQDQSTEILPESDKSQLVTLDSGEVSTES 420

Query: 420 SALPEGES 427
           S LPEGES
Sbjct: 421 SVLPEGES 428