Miyakogusa Predicted Gene

Lj0g3v0146489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146489.1 Non Characterized Hit- tr|E1ZCG5|E1ZCG5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40,0.00000000005,Neurochondrin,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochondrin,CUFF.8947.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106410.2 | neurochondrin protein | HC | chr3:49176740-491...   375   e-104
Medtr3g106410.1 | neurochondrin protein | HC | chr3:49176740-491...   375   e-104

>Medtr3g106410.2 | neurochondrin protein | HC |
           chr3:49176740-49182193 | 20130731
          Length = 435

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/241 (78%), Positives = 212/241 (87%)

Query: 1   MEPNREQSPNLEECLKLLKGERDEQRLAGLLLVTKFCKADDHSSLCRVYDAVGPIFLDRL 60
           ME  +E S NLE+CLKLLKGERDEQRLAGLLLVTKFCKADDHSSL +VY+AVG  FL+RL
Sbjct: 1   MEAQQEPSLNLEDCLKLLKGERDEQRLAGLLLVTKFCKADDHSSLRKVYNAVGFRFLERL 60

Query: 61  LRTGMGRGTISSGRGNNRDAYLSLAVTVLSTFSRVPEIASSEDMVVQIPLILEVMSTQSG 120
           LRTGMG+G ISS   NNRDAYLSL+VTVL+   RVPEIASSEDM   IPLILEVMST+SG
Sbjct: 61  LRTGMGKGAISSDGDNNRDAYLSLSVTVLAALCRVPEIASSEDMTSMIPLILEVMSTRSG 120

Query: 121 SSVLEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQDGSHLVEISVKLLQLILR 180
           SSVLEEC EFLYLVSTASENG+ RFYES+GIKI ASQ+ S++DGSHLVEIS+KLLQ +L 
Sbjct: 121 SSVLEECCEFLYLVSTASENGITRFYESRGIKIAASQLPSMEDGSHLVEISIKLLQSVLS 180

Query: 181 RISLDTIQNNYLAELSVIVAVIARQFAVLHNSLKFEALHLLNAILSSKDSSQLRDALQFF 240
           RISLDTIQN+YL+ELSVIVAV+ARQFA+LHNSLKF+ALHLLN+ILSS DSSQL   L+  
Sbjct: 181 RISLDTIQNDYLSELSVIVAVVARQFAILHNSLKFDALHLLNSILSSTDSSQLLQTLKLR 240

Query: 241 P 241
           P
Sbjct: 241 P 241


>Medtr3g106410.1 | neurochondrin protein | HC |
           chr3:49176740-49185818 | 20130731
          Length = 620

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/241 (78%), Positives = 212/241 (87%)

Query: 1   MEPNREQSPNLEECLKLLKGERDEQRLAGLLLVTKFCKADDHSSLCRVYDAVGPIFLDRL 60
           ME  +E S NLE+CLKLLKGERDEQRLAGLLLVTKFCKADDHSSL +VY+AVG  FL+RL
Sbjct: 1   MEAQQEPSLNLEDCLKLLKGERDEQRLAGLLLVTKFCKADDHSSLRKVYNAVGFRFLERL 60

Query: 61  LRTGMGRGTISSGRGNNRDAYLSLAVTVLSTFSRVPEIASSEDMVVQIPLILEVMSTQSG 120
           LRTGMG+G ISS   NNRDAYLSL+VTVL+   RVPEIASSEDM   IPLILEVMST+SG
Sbjct: 61  LRTGMGKGAISSDGDNNRDAYLSLSVTVLAALCRVPEIASSEDMTSMIPLILEVMSTRSG 120

Query: 121 SSVLEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQDGSHLVEISVKLLQLILR 180
           SSVLEEC EFLYLVSTASENG+ RFYES+GIKI ASQ+ S++DGSHLVEIS+KLLQ +L 
Sbjct: 121 SSVLEECCEFLYLVSTASENGITRFYESRGIKIAASQLPSMEDGSHLVEISIKLLQSVLS 180

Query: 181 RISLDTIQNNYLAELSVIVAVIARQFAVLHNSLKFEALHLLNAILSSKDSSQLRDALQFF 240
           RISLDTIQN+YL+ELSVIVAV+ARQFA+LHNSLKF+ALHLLN+ILSS DSSQL   L+  
Sbjct: 181 RISLDTIQNDYLSELSVIVAVVARQFAILHNSLKFDALHLLNSILSSTDSSQLLQTLKLR 240

Query: 241 P 241
           P
Sbjct: 241 P 241