Miyakogusa Predicted Gene

Lj0g3v0146479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146479.1 Non Characterized Hit- tr|I1JG18|I1JG18_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5582
PE=,81.32,0,Neurochondrin,NULL; NEUROCHONDRIN-RELATED,NULL;
NEUROCHONDRIN,Neurochondrin; seg,NULL,CUFF.8942.1
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106410.1 | neurochondrin protein | HC | chr3:49176740-491...   582   e-166
Medtr3g106410.2 | neurochondrin protein | HC | chr3:49176740-491...   258   5e-69

>Medtr3g106410.1 | neurochondrin protein | HC |
           chr3:49176740-49185818 | 20130731
          Length = 620

 Score =  582 bits (1499), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/368 (76%), Positives = 318/368 (86%), Gaps = 7/368 (1%)

Query: 9   YACPAERLQALILAESVISMYGEDWLIRQVSTNDAQDPTPADMCLLLVLEQSRVEIAVLL 68
           +  PAERLQALILAES++S++GEDWLI       +QDPTP +MCLLLVLEQSRVEIAVLL
Sbjct: 260 HVAPAERLQALILAESMVSIFGEDWLI-------SQDPTPDNMCLLLVLEQSRVEIAVLL 312

Query: 69  NELAYLKYEAPQDTSSTAEAYSLKRQNVVVAYSLVEKIIKLVSNVGENDGNLLDEGTFTK 128
           NELAYLKY APQDT ++ EAYSLK++NVVVAYSLVEKIIKL+SNVGENDGNLLDE T TK
Sbjct: 313 NELAYLKYGAPQDTPASVEAYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLDEDTLTK 372

Query: 129 LIQQLNETVAVILEYLEDAKEHGQKKGDDLLASVRIIGSYLAEAPLACQEKVKDLLGYML 188
           LI+QLNET+AV+LEYLEDAKEHGQ+KG+DLLASVRIIGSYLAEAPLA +EKV+DLLGYML
Sbjct: 373 LIRQLNETIAVVLEYLEDAKEHGQRKGNDLLASVRIIGSYLAEAPLASKEKVQDLLGYML 432

Query: 189 SVEGEDEQRPFYSVCFLLPMLCQITMKVEGCKALASCGELKAVLDCLSNLIGSNGYTVED 248
           S+EG DEQRPF SVCFLLP+LCQITM+VEGCKAL  CG L++V DCL+ LI S  + +ED
Sbjct: 433 SIEGADEQRPFRSVCFLLPLLCQITMEVEGCKALCLCGGLQSVFDCLAKLIRSKHHMLED 492

Query: 249 SSCIFLACDTIMNLLLKKDKVQLTLDGSFFADLVKALAYWSENTDDXXXXXXXXXICALI 308
             C+FLACDTIMNLLLKKD+VQLTLD + F D++KALAYWSENTDD         ICALI
Sbjct: 493 DGCVFLACDTIMNLLLKKDEVQLTLDEAAFVDVLKALAYWSENTDDMSSRMMATSICALI 552

Query: 309 FDFTSEEALLNQPDFNHSTLSSLYQLIARCLASSEQDTETDMDLSEIISAGFSRWAHRYP 368
           FD+TSEEALLN PDFNH TLSSLYQLIARCL S +Q T  DMDLSEIISAGFSRWAHRYP
Sbjct: 553 FDYTSEEALLNYPDFNHDTLSSLYQLIARCLTSPKQGTNPDMDLSEIISAGFSRWAHRYP 612

Query: 369 QIKVAVKI 376
            I+ A+K+
Sbjct: 613 HIREAIKV 620


>Medtr3g106410.2 | neurochondrin protein | HC |
           chr3:49176740-49182193 | 20130731
          Length = 435

 Score =  258 bits (660), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/160 (79%), Positives = 144/160 (90%), Gaps = 7/160 (4%)

Query: 9   YACPAERLQALILAESVISMYGEDWLIRQVSTNDAQDPTPADMCLLLVLEQSRVEIAVLL 68
           +  PAERLQALILAES++S++GEDWLI       +QDPTP +MCLLLVLEQSRVEIAVLL
Sbjct: 260 HVAPAERLQALILAESMVSIFGEDWLI-------SQDPTPDNMCLLLVLEQSRVEIAVLL 312

Query: 69  NELAYLKYEAPQDTSSTAEAYSLKRQNVVVAYSLVEKIIKLVSNVGENDGNLLDEGTFTK 128
           NELAYLKY APQDT ++ EAYSLK++NVVVAYSLVEKIIKL+SNVGENDGNLLDE T TK
Sbjct: 313 NELAYLKYGAPQDTPASVEAYSLKQRNVVVAYSLVEKIIKLISNVGENDGNLLDEDTLTK 372

Query: 129 LIQQLNETVAVILEYLEDAKEHGQKKGDDLLASVRIIGSY 168
           LI+QLNET+AV+LEYLEDAKEHGQ+KG+DLLASVRIIG Y
Sbjct: 373 LIRQLNETIAVVLEYLEDAKEHGQRKGNDLLASVRIIGRY 412