Miyakogusa Predicted Gene

Lj0g3v0146299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146299.1 Non Characterized Hit- tr|A5BVV5|A5BVV5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,58.9,2e-19,beta-sandwich domain of Sec23/24,NULL;
zf-Sec23_Sec24,Zinc finger, Sec23/Sec24-type; PROTEIN
TRANSPO,CUFF.8919.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g084740.1 | protein transporter Sec23-like protein | HC | ...   158   1e-39
Medtr3g084740.2 | protein transporter Sec23-like protein | HC | ...   157   2e-39
Medtr8g011270.1 | protein transporter Sec23-like protein | HC | ...    98   2e-21
Medtr1g105605.1 | protein transporter Sec23-like protein | HC | ...    54   2e-08
Medtr1g105605.2 | protein transporter Sec23-like protein | HC | ...    54   2e-08

>Medtr3g084740.1 | protein transporter Sec23-like protein | HC |
          chr3:38270252-38263566 | 20130731
          Length = 771

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 78/82 (95%)

Query: 1  MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCK 60
          MSEMA+TDPEG+DGVRMTWNVWP SKVE+SKCVIPLAAT+++IR HPDIP LPY+PLRCK
Sbjct: 1  MSEMANTDPEGIDGVRMTWNVWPRSKVESSKCVIPLAATISLIRSHPDIPSLPYAPLRCK 60

Query: 61 TCTSALNPFARVDFTAKIWICP 82
          TCTS LNP++RVDFTAKIWICP
Sbjct: 61 TCTSILNPYSRVDFTAKIWICP 82


>Medtr3g084740.2 | protein transporter Sec23-like protein | HC |
          chr3:38270164-38263958 | 20130731
          Length = 702

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 78/82 (95%)

Query: 1  MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCK 60
          MSEMA+TDPEG+DGVRMTWNVWP SKVE+SKCVIPLAAT+++IR HPDIP LPY+PLRCK
Sbjct: 1  MSEMANTDPEGIDGVRMTWNVWPRSKVESSKCVIPLAATISLIRSHPDIPSLPYAPLRCK 60

Query: 61 TCTSALNPFARVDFTAKIWICP 82
          TCTS LNP++RVDFTAKIWICP
Sbjct: 61 TCTSILNPYSRVDFTAKIWICP 82


>Medtr8g011270.1 | protein transporter Sec23-like protein | HC |
          chr8:2969140-2977863 | 20130731
          Length = 763

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 52/75 (69%)

Query: 8  DPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCKTCTSALN 67
          D E  DGVRM WNV P +K E+   V+P+AA    I+  P +P LPYSPLRC+TC S LN
Sbjct: 7  DLETQDGVRMPWNVIPGTKQESVNVVVPVAAIYTPIKHFPTMPILPYSPLRCRTCRSILN 66

Query: 68 PFARVDFTAKIWICP 82
          PF  VDF AKIWICP
Sbjct: 67 PFCIVDFAAKIWICP 81


>Medtr1g105605.1 | protein transporter Sec23-like protein | HC |
          chr1:47599557-47596521 | 20130731
          Length = 746

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 10 EGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPH-PDIPRLPYSPLRCKTCTSALNP 68
          E V+G+R +WN WPS+    S   IPL      +  H  D+P LPY PL C  C + LNP
Sbjct: 7  EAVEGLRWSWNSWPSTT--KSDLTIPLTIMCTPLSQHGTDLPLLPYDPLLCTRCGAVLNP 64

Query: 69 FARVDFTAKIWICP 82
          +AR+D+ ++IW CP
Sbjct: 65 YARLDYQSRIWHCP 78


>Medtr1g105605.2 | protein transporter Sec23-like protein | HC |
          chr1:47599557-47596521 | 20130731
          Length = 746

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 10 EGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPH-PDIPRLPYSPLRCKTCTSALNP 68
          E V+G+R +WN WPS+    S   IPL      +  H  D+P LPY PL C  C + LNP
Sbjct: 7  EAVEGLRWSWNSWPSTT--KSDLTIPLTIMCTPLSQHGTDLPLLPYDPLLCTRCGAVLNP 64

Query: 69 FARVDFTAKIWICP 82
          +AR+D+ ++IW CP
Sbjct: 65 YARLDYQSRIWHCP 78