Miyakogusa Predicted Gene

Lj0g3v0146199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146199.1 Non Characterized Hit- tr|I1LKG9|I1LKG9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.1,0.041,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; NUCLEAR
PORE GLYCOPROTEIN P62-RELATED,Nucleoporin NSP1/N,CUFF.8917.1
         (619 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g045280.1 | structural constituent of nuclear pore protein...   385   e-107

>Medtr7g045280.1 | structural constituent of nuclear pore protein,
           putative | HC | chr7:15909312-15903678 | 20130731
          Length = 270

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/207 (92%), Positives = 198/207 (95%)

Query: 412 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDHRILRNRDVLLRLEIAVAK 471
           PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWD RIL+NRDVLLRLEI VAK
Sbjct: 63  PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDVLLRLEIEVAK 122

Query: 472 VVETQSNLERQLELIETHQQEADKALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQS 531
           VVETQS+LERQLELIETHQQE DKALQS+EEEAERIYKDERGLLLDDEAASTRDAMYEQS
Sbjct: 123 VVETQSSLERQLELIETHQQEVDKALQSVEEEAERIYKDERGLLLDDEAASTRDAMYEQS 182

Query: 532 ELIERELEHMTEQIKSIIQSLNSNQGGELDAADGMNPLDAVVRILNNQLTSLMWIDEKAE 591
           ELIERELE MTEQIKSII SLNSNQGGE++A DGM PLDAVVRILNNQLTSLMWIDEKAE
Sbjct: 183 ELIERELEQMTEQIKSIIHSLNSNQGGEVEAPDGMTPLDAVVRILNNQLTSLMWIDEKAE 242

Query: 592 EFSSRIQKLSNQGSASDRELTGPGMWM 618
           EFSSRIQKLSNQGSASDR+L GPG WM
Sbjct: 243 EFSSRIQKLSNQGSASDRQLMGPGSWM 269