Miyakogusa Predicted Gene

Lj0g3v0143149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0143149.1 CUFF.8721.1
         (428 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g015930.1 | embryo defective 140 protein | HC | chr8:52658...   630   0.0  
Medtr7g098430.1 | Pre-mRNA-processing factor 39 | HC | chr7:3939...    55   9e-08
Medtr6g026900.2 | cleavage stimulation factor | HC | chr6:909410...    55   1e-07
Medtr6g026900.1 | cleavage stimulation factor | HC | chr6:909424...    55   1e-07

>Medtr8g015930.1 | embryo defective 140 protein | HC |
           chr8:5265897-5253842 | 20130731
          Length = 830

 Score =  630 bits (1626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/430 (71%), Positives = 346/430 (80%), Gaps = 6/430 (1%)

Query: 1   MEQTLTLTPE----PEAEREVMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNYDS 56
           +EQTLTLT E    PE +                                    P+NYD+
Sbjct: 3   VEQTLTLTSEAEREPEKDEATAMSDSSNDSDSDSDDEAQQNIQLQSLQTELAANPANYDA 62

Query: 57  HLQYIKLLRGMGDVDKLRRARESMSEMFPLTPAMWQEWIKDEISLNTASGPEAFSEILKL 116
           HLQYI LLR  GDVDKLR+ARE M+E+FPLTP++WQ+WIKDE+SL TA+  + FS ++KL
Sbjct: 63  HLQYITLLRKTGDVDKLRKAREVMAEIFPLTPSLWQQWIKDELSLTTANN-DTFSTVVKL 121

Query: 117 YERGVFDYLSVSLWCDYINFVQEFDPMVRQCSPTGISKSRDLFESALTAAGLHVAQGSKI 176
           YE  VFDYLSVSLWCDY+  VQ+FDPM++Q SPT ISK RDLFE ALTAAGLHVAQGSKI
Sbjct: 122 YECAVFDYLSVSLWCDYLQSVQDFDPMLKQSSPTAISKGRDLFERALTAAGLHVAQGSKI 181

Query: 177 WEAYRQYELAILLTIEETDTQAKEKQIQRIRSLFHRQLSVPHAGMNSTLVAYKTWEVEQG 236
           WEAYRQYE AILLTI+E+DTQAKEKQ+Q IRSLFHRQLS+P A MNS L+AYKTWEVEQG
Sbjct: 182 WEAYRQYEQAILLTIDESDTQAKEKQVQHIRSLFHRQLSIPLADMNSALIAYKTWEVEQG 241

Query: 237 NLHDVESNDLVDKYPHVASAYQKALEMYNARVHLEEQVSNPDISDSERLQHYMNYLKFEQ 296
           N HDV S DL+D+YPHVASAYQKALEMYNARVHLEEQ+S+ DISDSERLQ YMNYLKFEQ
Sbjct: 242 NFHDV-SIDLIDRYPHVASAYQKALEMYNARVHLEEQISSQDISDSERLQQYMNYLKFEQ 300

Query: 297 SSGMPARVQVLYERSIADFPISPDLWLDYTCYLDKTLKAGNIVSNVYSRATKNCSWVGQL 356
           SSG PAR+QVLYER+I DFP+SPDLWLDYT YLDKTLK G IVS+VYSRATKNC WVG+L
Sbjct: 301 SSGTPARIQVLYERAITDFPLSPDLWLDYTHYLDKTLKVGKIVSDVYSRATKNCPWVGEL 360

Query: 357 WGQYMLSLERVHASEEDLAKIFEKSLQYTFSTLDEYLDLFLTRVDGLRRRMESTIEENLL 416
           W +YML LER HASE+DLA IFEKSLQ TFSTLDEYLDLFLTRVDGLRRRM  T EE+ L
Sbjct: 361 WVRYMLCLERGHASEKDLAAIFEKSLQCTFSTLDEYLDLFLTRVDGLRRRMTFTKEEDPL 420

Query: 417 EYKIIRETFQ 426
           EYKII+ETFQ
Sbjct: 421 EYKIIKETFQ 430


>Medtr7g098430.1 | Pre-mRNA-processing factor 39 | HC |
           chr7:39392862-39401978 | 20130731
          Length = 826

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 51/314 (16%)

Query: 69  DVDKLRRARESMSEMFPLTPAMWQEWIKDEISLNTASGPEAFSEILKLYERGVFDYL-SV 127
           ++ K+RR  ++    FPL    W+++   E  L +A       +++++YER V     SV
Sbjct: 186 NILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSAD------KVVEVYERAVQGVTYSV 239

Query: 128 SLWCDYINFVQEFDPMVRQCSPTGISKSRDLFESALTAAGLHVAQGSKIWEAYRQYE--- 184
            +W  Y  F      +     P  +   R LFE  L   G        +W+ Y +YE   
Sbjct: 240 DMWLHYCIFA-----ISTYGDPDTV---RRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQ 290

Query: 185 -----LAILLT-IEETDTQAKEKQIQRIRSLF-HRQLSVPHAGMNSTLVAYKTWE-VEQG 236
                LA++ T I E   Q  ++     + L  +R LS       +  VA    E ++QG
Sbjct: 291 QDWARLAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGIDQG 350

Query: 237 NLHDVESNDLVDKYPHVASA------------------YQKALEMYNARVHLEEQVSNPD 278
              +V   D  D  P  ASA                  Y+KA E  +  +  E  +  P 
Sbjct: 351 VEGEVHP-DGADNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETTIRRPY 409

Query: 279 IS----DSERLQHYMNYLKFEQSSGMPARVQVLYERSIADFPISPDLWLDYTCYLDKTLK 334
                 +   L+++ NYL F +  G  +++  LYER +      P+ W+ Y   ++ + +
Sbjct: 410 FHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEAS-E 468

Query: 335 AGNIVSNVYSRATK 348
           + ++ +NV +RA++
Sbjct: 469 SMDLANNVLARASQ 482


>Medtr6g026900.2 | cleavage stimulation factor | HC |
           chr6:9094104-9083521 | 20130731
          Length = 721

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 123/290 (42%), Gaps = 44/290 (15%)

Query: 78  ESMSEMFPLTPAMWQEWIKDEISLNTASGPEAFSEILKLYERGVFDYLSVSLWCDYINFV 137
           E + +++P     W+++++  +++N          I +++ R + + L V LW  YI F+
Sbjct: 30  EQLLQLYPTAAKFWKQYVEAHMAVNNDDA------IKQIFSRCLLNCLQVPLWRCYIRFI 83

Query: 138 QEFDPMVRQCSPTGISKSRDLFESALTAAGLHVAQGSKIWEAYRQYELAILLTIEETDTQ 197
           ++ +    +    G  +++  FE  L+  G  +A G  +W  Y    +A L ++     Q
Sbjct: 84  RKVN---DKKGAEGQEETKKAFEFMLSYVGSDIASGP-VWMEY----IAFLKSLPAAHPQ 135

Query: 198 AKEKQIQRIRSLFHRQLSVPHAGMNSTLVAYKTWEVEQGNLHDVESNDLVDKYPHVASAY 257
            +  ++  +R ++ R +  P   +      Y ++E    ++    +  L+ +Y      Y
Sbjct: 136 EETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFE---SSVSQKLAKGLISEY---QPKY 189

Query: 258 QKALEMYNARVHLEEQVS------NPDISDSERLQ--HYMNYLKFEQSSGMPARVQV--- 306
             A  +Y  R    +++        P  S  E +Q   +   L FE+  G P R+ +   
Sbjct: 190 NSARAVYRERKKFFDEIDWNMLAVPPTGSHKEEMQWMSWKKLLSFEK--GNPQRIDIASS 247

Query: 307 ------LYERSIADFPISPDLWLDYTCYLDKTLKAGNIVS--NVYSRATK 348
                  YE+ +      PD+W DY  +     KAG+I +   V+ R+ K
Sbjct: 248 NKRVIFTYEQCLMYLYHYPDVWYDYATW---HAKAGSIDAAIKVFQRSLK 294


>Medtr6g026900.1 | cleavage stimulation factor | HC |
           chr6:9094247-9083521 | 20130731
          Length = 721

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 123/290 (42%), Gaps = 44/290 (15%)

Query: 78  ESMSEMFPLTPAMWQEWIKDEISLNTASGPEAFSEILKLYERGVFDYLSVSLWCDYINFV 137
           E + +++P     W+++++  +++N          I +++ R + + L V LW  YI F+
Sbjct: 30  EQLLQLYPTAAKFWKQYVEAHMAVNNDDA------IKQIFSRCLLNCLQVPLWRCYIRFI 83

Query: 138 QEFDPMVRQCSPTGISKSRDLFESALTAAGLHVAQGSKIWEAYRQYELAILLTIEETDTQ 197
           ++ +    +    G  +++  FE  L+  G  +A G  +W  Y    +A L ++     Q
Sbjct: 84  RKVN---DKKGAEGQEETKKAFEFMLSYVGSDIASGP-VWMEY----IAFLKSLPAAHPQ 135

Query: 198 AKEKQIQRIRSLFHRQLSVPHAGMNSTLVAYKTWEVEQGNLHDVESNDLVDKYPHVASAY 257
            +  ++  +R ++ R +  P   +      Y ++E    ++    +  L+ +Y      Y
Sbjct: 136 EETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFE---SSVSQKLAKGLISEY---QPKY 189

Query: 258 QKALEMYNARVHLEEQVS------NPDISDSERLQ--HYMNYLKFEQSSGMPARVQV--- 306
             A  +Y  R    +++        P  S  E +Q   +   L FE+  G P R+ +   
Sbjct: 190 NSARAVYRERKKFFDEIDWNMLAVPPTGSHKEEMQWMSWKKLLSFEK--GNPQRIDIASS 247

Query: 307 ------LYERSIADFPISPDLWLDYTCYLDKTLKAGNIVS--NVYSRATK 348
                  YE+ +      PD+W DY  +     KAG+I +   V+ R+ K
Sbjct: 248 NKRVIFTYEQCLMYLYHYPDVWYDYATW---HAKAGSIDAAIKVFQRSLK 294