Miyakogusa Predicted Gene

Lj0g3v0142579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142579.1 Non Characterized Hit- tr|B9T1T7|B9T1T7_RICCO
NOI, putative OS=Ricinus communis GN=RCOM_0691110
PE=4,70.89,2e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.8714.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family prote...   107   3e-24
Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family prote...    84   2e-17
Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family prote...    78   2e-15
Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family prote...    70   4e-13
Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein ...    61   2e-10
Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein ...    61   2e-10
Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein ...    57   3e-09
Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein ...    57   3e-09
Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein ...    57   3e-09
Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family prote...    54   4e-08
Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family prote...    50   4e-07

>Medtr5g096030.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr5:41984600-41987102 | 20130731
          Length = 76

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 62/77 (80%), Gaps = 4/77 (5%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS-ESPGKTATKTQSKPALDPGK 61
          DKGRPLPKFGEWDVNDPASAEG+TVIFNKARDEKKTGG  ESP K    TQ++P L+  K
Sbjct: 2  DKGRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPESPAK--ANTQTRPPLEHAK 59

Query: 62 PQSKKWFCCVN-PPAES 77
             K WFCC++ PPAES
Sbjct: 60 THGKSWFCCLHSPPAES 76


>Medtr8g089560.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr8:37224822-37225345 | 20130731
          Length = 75

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 49/67 (73%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGKP 62
          + GRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG  S    + + +S    D  K 
Sbjct: 6  NNGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGGGSGRVNSQRLRSNSRKDDDKS 65

Query: 63 QSKKWFC 69
            KKWFC
Sbjct: 66 SKKKWFC 72


>Medtr4g104085.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr4:43086977-43089894 | 20130731
          Length = 108

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 37/40 (92%)

Query: 2  SDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS 41
           DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT  S
Sbjct: 18 QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTS 57


>Medtr3g086160.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr3:38988227-38988508 | 20130731
          Length = 93

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 34/37 (91%)

Query: 5  GRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS 41
          G+PLPKFGEWDVNDP+SAEGFTVIFNKARD+KK   +
Sbjct: 10 GKPLPKFGEWDVNDPSSAEGFTVIFNKARDDKKIASA 46


>Medtr8g012960.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947090-3941471 | 20130731
          Length = 260

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGKP 62
           DKG  +PKFG+WDV++PASA+G+T IFNK R+E++ G   +PG        +P +   + 
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPG----TPNERPHVIRNQN 246

Query: 63  QSKKWFCC 70
             K   CC
Sbjct: 247 NDKAQCCC 254


>Medtr8g012960.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr8:3947114-3943191 | 20130731
          Length = 260

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 3   DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGKP 62
           DKG  +PKFG+WDV++PASA+G+T IFNK R+E++ G   +PG        +P +   + 
Sbjct: 191 DKGAAVPKFGDWDVSNPASADGYTHIFNKVREERQGGAGHAPG----TPNERPHVIRNQN 246

Query: 63  QSKKWFCC 70
             K   CC
Sbjct: 247 NDKAQCCC 254


>Medtr7g056147.3 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 211

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 1   MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKT---QSKPAL 57
           + DK   +PKFGEWD +DPASA+G+T IFNK R+EK      +PG    ++   +++PA 
Sbjct: 139 IPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIRNQPAN 198

Query: 58  DPGKPQSKKWFCC 70
           D      K   CC
Sbjct: 199 D------KAQGCC 205


>Medtr7g056147.1 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567292-19571440 | 20130731
          Length = 248

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 1   MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPG 45
           + DK   +PKFGEWD +DPASA+G+T IFNK R+EK      +PG
Sbjct: 176 IPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPG 220


>Medtr7g056147.2 | RPM1 interacting protein 4 transcript protein |
           HC | chr7:19567302-19571423 | 20130731
          Length = 249

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 1   MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKT---QSKPAL 57
           + DK   +PKFGEWD +DPASA+G+T IFNK R+EK      +PG    ++   +++PA 
Sbjct: 177 IPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNTPGTPNGRSYVIRNQPAN 236

Query: 58  DPGKPQSKKWFCC 70
           D      K   CC
Sbjct: 237 D------KAQGCC 243


>Medtr5g098260.1 | RPM1-interacting protein 4 (RIN4) family
          protein | HC | chr5:43039189-43038020 | 20130731
          Length = 98

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)

Query: 9  PKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESP 44
          PKFGEWD ND +SA G+TVIFNK ++EK+ G  +SP
Sbjct: 4  PKFGEWDANDSSSANGYTVIFNKIKEEKRGGKFQSP 39


>Medtr2g025170.1 | RPM1-interacting protein 4 (RIN4) family protein
           | HC | chr2:8954695-8955548 | 20130731
          Length = 192

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTAT----KTQSKPALDPGKPQ 63
           +P+FG+WDV DP S EG+TV+F+K ++EK+   S   G   T     +  K   D     
Sbjct: 119 IPEFGKWDVTDPKSGEGYTVMFSKIKEEKQIMSSRISGLRTTPHNNGSNIKNQHDGSSFN 178

Query: 64  SKKWFCCV 71
             K+ CC+
Sbjct: 179 LSKYCCCL 186