Miyakogusa Predicted Gene

Lj0g3v0142159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142159.1 tr|A9SI59|A9SI59_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_165067,42,1e-18,coiled-coil,NULL; seg,NULL,CUFF.8683.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g017880.1 | hypothetical protein | HC | chr4:5655281-56519...   159   1e-39

>Medtr4g017880.1 | hypothetical protein | HC | chr4:5655281-5651973
           | 20130731
          Length = 194

 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 115/200 (57%), Gaps = 12/200 (6%)

Query: 1   MNTT-LSPSASTTCXXXXXXXXXXXXXXITVPCSSKSTRIELHC--KRGSQYAGVRCNCS 57
           MNTT LSPS S T               I VP SSK   I+L    KRG Q  G+RCN +
Sbjct: 1   MNTTTLSPSPSPTTFASPRFSKTFSN--ILVPSSSKPISIQLPSCNKRGFQTTGLRCNNT 58

Query: 58  FRXXXXXXXXXXXXXRTVLDAFFLGKAVAEALNERIESTVGEFLSTVGRLQAEQQKQVQD 117
           F              + VLDAFFLGKA+AE LNERIEST+GE LSTVGRLQAEQQKQVQ+
Sbjct: 59  FFPGGPPSGDGDSSSKNVLDAFFLGKALAETLNERIESTLGELLSTVGRLQAEQQKQVQE 118

Query: 118 FQEEVLD--XXXXXXXXXXXXXXXXQGLISKSAAETK-VADSPSSRTSNSATDPVISVQI 174
           FQEEVLD                  QGL+SKS A T+ V DS +S T    TDPV SVQ 
Sbjct: 119 FQEEVLDRAKKAKEKAAREATEAQPQGLVSKSTAYTEVVVDSSTSET----TDPVTSVQS 174

Query: 175 TDASETYTEPTIKEDPALSS 194
           TD SE Y EP   EDP LSS
Sbjct: 175 TDVSEIYIEPNEGEDPTLSS 194