Miyakogusa Predicted Gene
- Lj0g3v0141969.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0141969.1 Non Characterized Hit- tr|I1MQS1|I1MQS1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32203
PE,75.53,0,seg,NULL,CUFF.8674.1
(330 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g134950.1 | outer envelope pore protein | HC | chr4:565667... 494 e-140
Medtr4g134950.2 | outer envelope pore protein | HC | chr4:565667... 319 2e-87
>Medtr4g134950.1 | outer envelope pore protein | HC |
chr4:56566735-56570539 | 20130731
Length = 336
Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/336 (72%), Positives = 269/336 (80%), Gaps = 9/336 (2%)
Query: 4 MESGAGNPN-YVVXXXXXXXXXXQLT--HSRRPILSFPTRPAVRVTTEFDSESAVFFNKI 60
M+S GNPN Y + S ILSFP+RPA+R+TTEFDSESA FF+K+
Sbjct: 1 MDSATGNPNNYTLQKIQSSPAVADPPPPSSTNHILSFPSRPALRITTEFDSESANFFHKV 60
Query: 61 SCKFLDSLAKLKFSFHNNSKGDISEPQISFVSKNLSLHYDLEDHNALVKSSIDVGPRFQL 120
SCKFLDSLAKLK SFHNNSKGDISEPQISFVSK+LSLHYDLEDH+ALVKSS+DVGPRF+L
Sbjct: 61 SCKFLDSLAKLKLSFHNNSKGDISEPQISFVSKHLSLHYDLEDHSALVKSSVDVGPRFKL 120
Query: 121 KAAHDVKAQQGEVAMVANLANPGYALELSTAVPSVGLPKATFRFPVGXXX------XXXX 174
AHDVKAQQGEV MVAN+A+PGYAL+LST +PS GLPKATFRFP+G
Sbjct: 121 TGAHDVKAQQGEVTMVANIADPGYALQLSTPLPSAGLPKATFRFPLGEVSLQEKEEEQQE 180
Query: 175 XXXXXXXXXXXXXGILKGRFLNGVCTAQYKDDDLKLGYCYKDDELSFHPVFSLPSNALTF 234
GILKG+FL GVCTA YKDD+LKL Y YKDDE+SF P+ SLPSN L+F
Sbjct: 181 EEQVKIKNSLLVSGILKGQFLKGVCTAHYKDDELKLRYRYKDDEMSFLPILSLPSNDLSF 240
Query: 235 AFKRQLGPSDKLSYWYNCDSNYWSAVYKHTYGKDFKFKAGYDSEVRLGWASLWVGDEGGK 294
AFKR+ G SDKLSYWYNCDSNYWSAVYKHTYG+DFK KAGYDSEVRLGWASLWVGDEGGK
Sbjct: 241 AFKRRFGLSDKLSYWYNCDSNYWSAVYKHTYGEDFKLKAGYDSEVRLGWASLWVGDEGGK 300
Query: 295 AKTAPMKMKVQFMLQVPQDDIKSSALMFRVKKRWDI 330
AKTAPMKMKVQFMLQVPQDDIKSS LMFR+KKRWDI
Sbjct: 301 AKTAPMKMKVQFMLQVPQDDIKSSVLMFRIKKRWDI 336
>Medtr4g134950.2 | outer envelope pore protein | HC |
chr4:56566735-56570528 | 20130731
Length = 271
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/252 (65%), Positives = 187/252 (74%), Gaps = 9/252 (3%)
Query: 4 MESGAGNPN-YVVXXXXXXXXXXQLT--HSRRPILSFPTRPAVRVTTEFDSESAVFFNKI 60
M+S GNPN Y + S ILSFP+RPA+R+TTEFDSESA FF+K+
Sbjct: 1 MDSATGNPNNYTLQKIQSSPAVADPPPPSSTNHILSFPSRPALRITTEFDSESANFFHKV 60
Query: 61 SCKFLDSLAKLKFSFHNNSKGDISEPQISFVSKNLSLHYDLEDHNALVKSSIDVGPRFQL 120
SCKFLDSLAKLK SFHNNSKGDISEPQISFVSK+LSLHYDLEDH+ALVKSS+DVGPRF+L
Sbjct: 61 SCKFLDSLAKLKLSFHNNSKGDISEPQISFVSKHLSLHYDLEDHSALVKSSVDVGPRFKL 120
Query: 121 KAAHDVKAQQGEVAMVANLANPGYALELSTAVPSVGLPKATFRFPVGXXX------XXXX 174
AHDVKAQQGEV MVAN+A+PGYAL+LST +PS GLPKATFRFP+G
Sbjct: 121 TGAHDVKAQQGEVTMVANIADPGYALQLSTPLPSAGLPKATFRFPLGEVSLQEKEEEQQE 180
Query: 175 XXXXXXXXXXXXXGILKGRFLNGVCTAQYKDDDLKLGYCYKDDELSFHPVFSLPSNALTF 234
GILKG+FL GVCTA YKDD+LKL Y YKDDE+SF P+ SLPSN L+F
Sbjct: 181 EEQVKIKNSLLVSGILKGQFLKGVCTAHYKDDELKLRYRYKDDEMSFLPILSLPSNDLSF 240
Query: 235 AFKRQLGPSDKL 246
AFKR+ G SDKL
Sbjct: 241 AFKRRFGLSDKL 252