Miyakogusa Predicted Gene
- Lj0g3v0141519.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0141519.1 Non Characterized Hit- tr|I1MNZ2|I1MNZ2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,67.31,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PORR,Plant organelle
RNA recognition doma,CUFF.8635.1
(703 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 473 e-133
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 297 2e-80
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 214 2e-55
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 214 2e-55
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 202 1e-51
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 190 4e-48
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 158 2e-38
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 141 2e-33
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 141 3e-33
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 140 3e-33
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 140 3e-33
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 139 7e-33
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 139 7e-33
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 139 7e-33
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 139 7e-33
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 138 2e-32
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 138 2e-32
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 138 2e-32
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 132 1e-30
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 130 6e-30
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 126 6e-29
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 125 1e-28
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 117 4e-26
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 111 2e-24
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 108 2e-23
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 104 3e-22
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 97 7e-20
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 96 9e-20
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 96 2e-19
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 91 5e-18
Medtr7g009010.1 | plant organelle RNA recognition domain protein... 55 2e-07
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/355 (65%), Positives = 287/355 (80%), Gaps = 11/355 (3%)
Query: 26 RTIFDGTFQLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLIRDS--IDLPFR 83
RT+F GTF LVRDRGLDHAVEREKNLKPL+ L +LI EP+KSLP S+I+ S ++LPFR
Sbjct: 21 RTLFSGTFTLVRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISIIKQSRSLNLPFR 80
Query: 84 PIEFIRKYPTVFEEFLAGG--LQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLL 141
PIEFIRKYP+VFEEF G +PH+KLT + +DL+A+E+ SD+ K+ A R+LKLL
Sbjct: 81 PIEFIRKYPSVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLL 140
Query: 142 MISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV---RDDDVLELVCWSDELAV 198
MI++ +KIPL V++ LKWDLGLP DYV+SV+PEFPD+FRV ++ VLELVCWS + +V
Sbjct: 141 MIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELVCWSKKHSV 200
Query: 199 SVLEKK----CMGKGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASS 254
S LEKK G+GKE+ FPVQFS+GFEMDKKYEKW+KEWN L YVSPYEN +L SS
Sbjct: 201 SFLEKKYGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYENGVNLSGSS 260
Query: 255 DESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKIGT 314
+ESD+WVVGVLHEIL++LV KKTE+DNV ++GE LGL SRFKR +LQHPGIFY+SSK
Sbjct: 261 EESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVILQHPGIFYVSSKNRM 320
Query: 315 YTVVLREGYKRGSLIEDHPVMQLRGKYVHLMNTVKEESKEGKVAQGKSSKKEGNV 369
YTVVLR+GYKRG L+ED+P M+ R +Y+HLMNTVKE+SK K +GK+S KEG++
Sbjct: 321 YTVVLRDGYKRGLLVEDNPAMEFRRRYIHLMNTVKEDSKNDKSEKGKTSSKEGSL 375
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 297 bits (761), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/341 (46%), Positives = 222/341 (65%), Gaps = 20/341 (5%)
Query: 26 RTIFDGTFQLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLP---ASLIRDSIDLPF 82
RT + + VRD LD AV +EKNLK +I LKN I PSKSL AS+++ S++LP
Sbjct: 15 RTFVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPM 74
Query: 83 RPIEFIRKYPTVFEEFL-AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLL 141
I+ + KY VF +F + GL P IKLT + L L EE +S ++ AA RL +LL
Sbjct: 75 ITIKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLL 134
Query: 142 MISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV---------RDDDVLELVCW 192
M++ + ++P+ VIE+LKWD+GLPHDYV +++ +PDYF V ++ LELV W
Sbjct: 135 MLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSW 194
Query: 193 SDELAVSVLEKKCMG-------KGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYE 245
EL+VS LEK+ MG + ++ FP+ F ++K+ + W++ W LPY+SPYE
Sbjct: 195 RKELSVSELEKRVMGFNYDADKRRHDIQFPMFLPKSFALEKRVKTWVEGWQTLPYISPYE 254
Query: 246 NAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGI 305
NA HL ++SD++++W V +LHE+L +LV KKTE +N+ GE LGL SRFK+AL+ HPGI
Sbjct: 255 NAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRFKKALVHHPGI 314
Query: 306 FYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLMN 346
FYLS+KI T T VLRE Y+ L+++HPVM R Y+HLM
Sbjct: 315 FYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTRYWYIHLMT 355
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 200/345 (57%), Gaps = 28/345 (8%)
Query: 24 QRRTIFDGTFQLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDL 80
Q+ ++ + + V+DR +D V +++LK L ++I +P + R + L
Sbjct: 26 QKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGL 85
Query: 81 P--FRPIEFIRKYPTVFEEFLA----GGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAA 134
P + FIR+YP VF E + G P L+ E + + EE DI+++ +
Sbjct: 86 PDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREE-----VDILRENSL 140
Query: 135 ---DRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFR-VRDDDV---L 187
DRL KLLM++R +PL I++LKWDLGLP+DY +S V P+ F VR DV L
Sbjct: 141 EFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGL 200
Query: 188 ELVCWSDELAVSVLEKKCMG-------KGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPY 240
+L+ W D+LAVS LEK K +AFPV F+ GF M +K +WL+EW KLPY
Sbjct: 201 KLLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPY 260
Query: 241 VSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALL 300
SPY +A+HL +D S++ VVGV HE+LH+ + K+TER NV L L L +F +A
Sbjct: 261 TSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFE 320
Query: 301 QHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+HPGIFY+S K T TVVLRE Y G L++ HP++++R + +L+
Sbjct: 321 RHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLL 365
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 200/345 (57%), Gaps = 28/345 (8%)
Query: 24 QRRTIFDGTFQLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDL 80
Q+ ++ + + V+DR +D V +++LK L ++I +P + R + L
Sbjct: 26 QKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGL 85
Query: 81 P--FRPIEFIRKYPTVFEEFLA----GGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAA 134
P + FIR+YP VF E + G P L+ E + + EE DI+++ +
Sbjct: 86 PDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREE-----VDILRENSL 140
Query: 135 ---DRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFR-VRDDDV---L 187
DRL KLLM++R +PL I++LKWDLGLP+DY +S V P+ F VR DV L
Sbjct: 141 EFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGL 200
Query: 188 ELVCWSDELAVSVLEKKCMG-------KGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPY 240
+L+ W D+LAVS LEK K +AFPV F+ GF M +K +WL+EW KLPY
Sbjct: 201 KLLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPY 260
Query: 241 VSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALL 300
SPY +A+HL +D S++ VVGV HE+LH+ + K+TER NV L L L +F +A
Sbjct: 261 TSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFE 320
Query: 301 QHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+HPGIFY+S K T TVVLRE Y G L++ HP++++R + +L+
Sbjct: 321 RHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLL 365
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 204/380 (53%), Gaps = 38/380 (10%)
Query: 18 NPRLLSQRRTIFDGTFQLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLIRD- 76
N +L Q R I + V++R +DH +++E +LK LK+ IK + L A D
Sbjct: 15 NLQLQFQSRGIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDW 74
Query: 77 --SIDLPFRPIEFIRKYPTVFEEFLAG--GLQPHIKLTPEVLDLDAEEQLTF---HSDIV 129
+ L + FIR+YPT+F EF P +LT LD++EQ + +DIV
Sbjct: 75 QKLLGLTVPVLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIV 134
Query: 130 KQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRDD----D 185
+R K+LM+ + +P+ + LK+DLGLP + ++++P++PD F+
Sbjct: 135 -----ERFSKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVS 189
Query: 186 VLELVCWSDELAVSVLEK--KC-----------MGKGK-EVAFPVQFSSGFEMDKKYEKW 231
+ LV W DE AVS L+K +C +GK + FP++F G+ KK W
Sbjct: 190 AIRLVDWCDEFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFW 249
Query: 232 LKEWNKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGL 291
+ E+ KLPY+SPY +++ + SD ++ VVGVLHE L + + KKT+R+ + L E L L
Sbjct: 250 MDEFQKLPYISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNL 309
Query: 292 RSRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLMNTVKEE 351
+F R ++PGIFYLS K T TV LREGY RG L++ HP+ + R K+ H+M T
Sbjct: 310 PHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARHRDKFYHVMRT---- 365
Query: 352 SKEGKVAQGKSSKKEGNVAG 371
G + +G S K G A
Sbjct: 366 ---GLLYRGDGSLKLGEDAS 382
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 176/309 (56%), Gaps = 16/309 (5%)
Query: 51 LKPLIDLKNLIKLEPSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGL-QPH 106
LKP+I LKN I +P+ +P S + +D+P + F+R+YP++FEEF P
Sbjct: 69 LKPVIALKNCIAQDPNGCIPISSVSKRGLQLDVPMKVARFLRQYPSIFEEFTGPKYNHPW 128
Query: 107 IKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHD 166
+LTPE ++D +E+ + +++ RL K++++++ + +PL +I+ ++W LGLPHD
Sbjct: 129 FRLTPEAAEIDRDEKRVYEES--REELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHD 186
Query: 167 YVESVVPEFPDYFRV--RDDDVLELVCWSDELAVSVLEKKCMGKG--------KEVAFPV 216
+++ D FR +D + L S E SV+E+ M KG + + FP
Sbjct: 187 FLQHHEQNLDDSFRFVEMEDGLKGLAIESRERVYSVMEENAMKKGMYYDGSQTEAIEFPF 246
Query: 217 QFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKK 276
S M K E WL E+ KLPY+SPY++ ++L +SD +++ ++GVLHE+L + +
Sbjct: 247 FPSKALRMKTKIENWLHEFQKLPYISPYDDFSNLDPNSDIAEKRLIGVLHELLSLFIDHS 306
Query: 277 TERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQ 336
ER + L + G + RA +HP +FY+S + T TV+L+E Y IE+HP++
Sbjct: 307 AERRKLLCLKKYFGFPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNELAIENHPLLS 366
Query: 337 LRGKYVHLM 345
+R +Y+ LM
Sbjct: 367 VRKRYIKLM 375
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 120/190 (63%), Gaps = 16/190 (8%)
Query: 102 GLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDL 161
GL P +KLT + L L EE +S ++ AA RL +LLM++ + + P+ VIE+LKWD+
Sbjct: 49 GLPPRVKLTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIEKLKWDM 108
Query: 162 GLPHDYVESVVPEFPDYFRV---------RDDDVLELVCWSDELAVSVLEKKCMG----- 207
GLPHDYV +++ +PDYF V ++ LE V W EL+VS LEK+ MG
Sbjct: 109 GLPHDYVTTLLAHYPDYFDVCVVEDPLSGKEVLALEFVLWRKELSVSELEKRVMGFNYGA 168
Query: 208 --KGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESDRWVVGVL 265
+ ++ FP+ F ++K+ + W++ W LPY+SPYENA HL ++SD++++W V +L
Sbjct: 169 DNRRYDIQFPMFLPKSFALEKRVKTWVEGWQTLPYISPYENAFHLDSNSDQAEKWSVAIL 228
Query: 266 HEILHVLVPK 275
HE+L +LV K
Sbjct: 229 HELLSLLVSK 238
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ +E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-REF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ +E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-REF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDLPFRPIEFIRKYPT 93
+D LD A+E++K K + + EP + +P + R + L + F+ + P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPF 96
Query: 94 VFEEFLAGGLQP------HIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIH 147
+F+ + ++P ++++ +L EE+ + + + +L KLLM+S+
Sbjct: 97 LFDVY-YDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKEN--EPLIVSKLCKLLMMSKDK 153
Query: 148 KIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLE 202
+ + +K + G P+D++ +VP +P+YFR+ LELV W+ E A SV+E
Sbjct: 154 VVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVE 213
Query: 203 KKC----MGKGKEV--AFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDE 256
K+ G V +F V+ GF + K+ +W+++W +L YVSPYE+ +H SS E
Sbjct: 214 KRAEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFEQSSRE 273
Query: 257 SDRWVVGVLHEILHVLVPKKTERDNVFVLGELLG---LRSRFKRALLQHPGIFYLSSKIG 313
++ VGV HE+L + + K R V +LG+ + F A +H GIFYLS K G
Sbjct: 274 MEKRSVGVFHELLSLSLYK---RIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLKGG 330
Query: 314 TYTVVLREGYKRGSLIEDHPVMQLRGKYVHLMN 346
T +LRE Y+ LI P++Q++ ++ L+N
Sbjct: 331 IETAMLREAYEGDKLIHIDPLLQIKDRFAELLN 363
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 172/333 (51%), Gaps = 29/333 (8%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDLPFRPIEFIRKYPT 93
+D LD A+E++K K + + EP + +P + R + L + F+ + P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPF 96
Query: 94 VFEEFLAGGLQP------HIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIH 147
+F+ + ++P ++++ +L EE+ + + + +L KLLM+S+
Sbjct: 97 LFDVY-YDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKEN--EPLIVSKLCKLLMMSKDK 153
Query: 148 KIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLE 202
+ + +K + G P+D++ +VP +P+YFR+ LELV W+ E A SV+E
Sbjct: 154 VVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVE 213
Query: 203 KKC----MGKGKEV--AFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDE 256
K+ G V +F V+ GF + K+ +W+++W +L YVSPYE+ +H SS E
Sbjct: 214 KRAEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFEQSSRE 273
Query: 257 SDRWVVGVLHEILHVLVPKKTERDNVFVLGELLG---LRSRFKRALLQHPGIFYLSSKIG 313
++ VGV HE+L + + K R V +LG+ + F A +H GIFYLS K G
Sbjct: 274 MEKRSVGVFHELLSLSLYK---RIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLKGG 330
Query: 314 TYTVVLREGYKRGSLIEDHPVMQLRGKYVHLMN 346
T +LRE Y+ LI P++Q++ ++ L+N
Sbjct: 331 IETAMLREAYEGDKLIHIDPLLQIKDRFAELLN 363
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-HEF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-HEF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-HEF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT +++L EEQ
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQ 109
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K LG P DY+ +V ++PD FR+
Sbjct: 110 SL--KDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ E+
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-HEF 224
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ VG++HE+L + + KK ++ LG L
Sbjct: 225 ELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 281
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+HPGIFY+S+K YTV+LREGY L++ P++ ++ K+ +M
Sbjct: 282 DKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIM 334
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 174/354 (49%), Gaps = 21/354 (5%)
Query: 36 VRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI----RDSIDLPFRPIEFIRKY 91
+RD D K L ++ +NLI S + + ++ L F++KY
Sbjct: 47 IRDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGLNVTVTSFLQKY 106
Query: 92 PTVFEEFLAGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQ---QAADRLLKLLMISRIHK 148
P VF F+ P + + +E + +V+Q + R+ KLLM+S
Sbjct: 107 PHVFYLFV----HPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVNGT 162
Query: 149 IPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRDDDVLELVCWSDELAVSVLEKKCMGK 208
+ L + ++ +LGLP D+ ES++ + D FR+ D +++ LV W DEL ++ +E+ +
Sbjct: 163 LHLHALRLIRRELGLPCDFRESILGRYSDEFRLVDLEIVALVGWDDELGMARVEEWRERE 222
Query: 209 GK---------EVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESDR 259
+ + AFP+ F +GF++++ + + LK W +L Y PYE ++
Sbjct: 223 YREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPYERKNVKCGGVQRYEK 282
Query: 260 WVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKIGTYTVVL 319
V VLHE+L + V K E D + + + LL+HPGIFY+S+K TV L
Sbjct: 283 RAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFYISTKGNAQTVFL 342
Query: 320 REGYKRGSLIEDHPVMQLRGKYVHLMNTVKEESKEGKVAQGKSSKKEGNVAGHE 373
RE Y++G LIE +PV ++R + L+ + ++K+ +A SK+E N +E
Sbjct: 343 REAYEKGGLIEPNPVYEVRRNMLELVLLGRRKTKQ-LLASCDESKEESNAVVYE 395
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 173/331 (52%), Gaps = 27/331 (8%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDLPFRPIEFIRKYPT 93
+D+ LD A+E++K K + + EP + +P + R + L + F+ + P
Sbjct: 37 KDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPF 96
Query: 94 VFEEF---LAGGLQP--HIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHK 148
+F+ + + +P ++++ +L EE+ + + + +L KLLM+S+
Sbjct: 97 LFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKEN--EPLIVSKLCKLLMMSKDKI 154
Query: 149 IPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLEK 203
+ + +K + G P+D++ +VP +P+YFR+ LELV W+ E A SV+E+
Sbjct: 155 VSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIER 214
Query: 204 KCMGKGKEV------AFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDES 257
+ + + +F V+ GF + K+ +W+++W +L YVSPYE+ +HL +S E
Sbjct: 215 RAEEESRATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLEQASREM 274
Query: 258 DRWVVGVLHEILHVLVPKKTERDNVFVLGELLG---LRSRFKRALLQHPGIFYLSSKIGT 314
++ VGV HE+L + + K+ V +LG+ + F A +H GIFY+S K G
Sbjct: 275 EKRSVGVFHELLSLSLYKRVP---VPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGI 331
Query: 315 YTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
T +LRE Y LI+ P++Q++ ++ L+
Sbjct: 332 ETAMLREAYDGDKLIDIDPLLQIKDRFAELL 362
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 173/331 (52%), Gaps = 27/331 (8%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI---RDSIDLPFRPIEFIRKYPT 93
+D+ LD A+E++K K + + EP + +P + R + L + F+ + P
Sbjct: 37 KDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPF 96
Query: 94 VFEEF---LAGGLQP--HIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHK 148
+F+ + + +P ++++ +L EE+ + + + +L KLLM+S+
Sbjct: 97 LFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKEN--EPLIVSKLCKLLMMSKDKI 154
Query: 149 IPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLEK 203
+ + +K + G P+D++ +VP +P+YFR+ LELV W+ E A SV+E+
Sbjct: 155 VSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIER 214
Query: 204 KCMGKGKEV------AFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDES 257
+ + + +F V+ GF + K+ +W+++W +L YVSPYE+ +HL +S E
Sbjct: 215 RAEEESRATGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLEQASREM 274
Query: 258 DRWVVGVLHEILHVLVPKKTERDNVFVLGELLG---LRSRFKRALLQHPGIFYLSSKIGT 314
++ VGV HE+L + + K+ V +LG+ + F A +H GIFY+S K G
Sbjct: 275 EKRSVGVFHELLSLSLYKRVP---VPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGI 331
Query: 315 YTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
T +LRE Y LI+ P++Q++ ++ L+
Sbjct: 332 ETAMLREAYDGDKLIDIDPLLQIKDRFAELL 362
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 157/293 (53%), Gaps = 25/293 (8%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT ++ L EEQ
Sbjct: 57 PNNQIPILTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMKLVHEEQ 111
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K GLP DY+ +V ++ D FR+
Sbjct: 112 SL--KDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRI 169
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ +E+
Sbjct: 170 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-REF 226
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLR 292
+PYVSPY + L S E ++ +G++HE+L + + KK ++ LG L
Sbjct: 227 ELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKI---SIMKLGHFKREFFLP 283
Query: 293 SRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
+ LL+H GIFY+S+K YTV+LREGY L++ +P++ ++ K+ +M
Sbjct: 284 DKVNVLLLKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVKEKFGKIM 336
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 146/270 (54%), Gaps = 22/270 (8%)
Query: 85 IEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMIS 144
+ +I KYP+ F+ Q H+ LT +++L EEQ D ++ RL KLLM S
Sbjct: 35 LNWISKYPSCFQFH-----QDHVLLTKRMMELVHEEQSL--KDSLESVFVPRLAKLLMFS 87
Query: 145 RIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRDDD------VLELVCWSDELAV 198
+ + + I +K LG P DY+ +V ++PD FR+R++ V+EL+ W+ + +V
Sbjct: 88 LNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSV 147
Query: 199 SVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESD 258
S + M G EV F S + K EK+ +E+ +PYVSPY + L S E +
Sbjct: 148 SEVAALAMKNGVEVNFSYCLPSSWV--KSLEKF-REFELVPYVSPYSDPRGLVEGSKEME 204
Query: 259 RWVVGVLHEILHVLVPKKTERDNVFVLGEL---LGLRSRFKRALLQHPGIFYLSSKIGTY 315
+ VG++HE+L + + KK ++ LG L + LL+HPGIFY+S+K Y
Sbjct: 205 KRNVGLVHELLSLTLWKKI---SIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIY 261
Query: 316 TVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
TV+LREGY L++ P++ ++ K+ +M
Sbjct: 262 TVLLREGYVGSQLVDKDPLVVVKEKFGEIM 291
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 180/381 (47%), Gaps = 53/381 (13%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEP-SKSLPASLIRD---SIDLPFRPIEFIRKYP 92
RD + +++ KNL +I + +LI P ++S+ + + + L F+RK+P
Sbjct: 54 RDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFP 113
Query: 93 TVFEEFL-AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHKIPL 151
+F + LQP +LT LD+ +E ++ + +RL+++L +S +PL
Sbjct: 114 HIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSL--PLVVERLVRILSMSASKTVPL 171
Query: 152 GVIERLKWDLGLPHDYVESVVPEFPDYFRVRDDD-----VLELV---------------- 190
+ ++ +LGLP D+ ESV+ F++ D D +L+LV
Sbjct: 172 RAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVPSSGFRAAVEDWR 231
Query: 191 ---CWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENA 247
C DE +V+ +E + +F ++ G + K + +KEW LPY+ PYE
Sbjct: 232 VVECCKDESSVNSMEMR-------YSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMV 284
Query: 248 AHLPASSDE----SDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHP 303
+ +S ++ V ++HE + + V K E + + + G+ + L HP
Sbjct: 285 SEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHP 344
Query: 304 GIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM-----------NTVKEES 352
GIFYLS+K +TV LRE Y+RG LI +PV R + + L+ + + ++S
Sbjct: 345 GIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDKS 404
Query: 353 KEGKVAQGKSSKKEGNVAGHE 373
+V QG++ +K +++ +
Sbjct: 405 CGNEVEQGENMQKHESLSSFD 425
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 172/339 (50%), Gaps = 30/339 (8%)
Query: 34 QLVRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLIRDSID-LPF---RPIEFIR 89
Q +RD G D+ +E EK + ++ +NLI EP++S+P S + + F I FI
Sbjct: 47 QRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIAFIL 106
Query: 90 KYPTVFEEFLAGGLQ--PHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIH 147
K+ VFE F +Q +LT + + +E+L + ++A RL K++M+S
Sbjct: 107 KFLHVFEIF-EHPVQRILFCRLTRKAILQIEQERLALADQV--ERAVTRLRKMIMMSNGL 163
Query: 148 KIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRD-----DDVLELVCWSDELAVSVLE 202
++ L + + LGLP D+ SVV +P++FR+ D + +ELV + +LA +E
Sbjct: 164 RLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIE 223
Query: 203 ----KKCMGKGKE-----VAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPAS 253
+ +G E +F + F GF++ K + + +W +LPY SPYE+
Sbjct: 224 DARERVYRERGSEAEDIRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLR 283
Query: 254 SDES----DRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLS 309
S E+ ++ V +HE+L + V KK + + + L + K LLQH GIFY+S
Sbjct: 284 SIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVS 343
Query: 310 SKIG---TYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
++ +TV LRE Y +G L+E + + R K V L+
Sbjct: 344 TRGNHGKLHTVFLREAYSKGELVEPNDLYLARRKLVELV 382
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 174/355 (49%), Gaps = 38/355 (10%)
Query: 41 LDHAVEREKNLKPLIDLKNLIKLEPSKSLPA---SLIRDSIDLP--FRPIEFIRKYPTVF 95
L+ A E+ K ++ L L++ EP +P S R I LP R +F+RK P +F
Sbjct: 42 LEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLF 101
Query: 96 EEFL--AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQ---QAADRLLKLLMISRIHKIP 150
E + G L + EVL EE H ++++ +AA+ + +LLM+S ++
Sbjct: 102 ELYKDRNGVLWCGLTQKAEVL---MEE----HKRVIEENEDKAAEYVTRLLMMSVDKRVQ 154
Query: 151 LGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLEKK- 204
L I + D GLP D+ V ++P FRV D + LELV W+ E A++ +EKK
Sbjct: 155 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKN 214
Query: 205 -CMGKG----------KEVAFPVQFSSGFE-MDKKYEKWLKEWNKLPYVSPYENAAHLPA 252
+ +G + FP++F + F+ + Y + +K + + Y+SPY +A L
Sbjct: 215 KMILEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLKP 274
Query: 253 SSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKI 312
S E D+ V V+HE+L V K+ D++ L + + R LL+H GIFY+S +
Sbjct: 275 GSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERG 334
Query: 313 GTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLMNTVKEESKEGKVAQGKSSKKEG 367
++V L E Y+ LIE P+ R K L++ V ++ K S +EG
Sbjct: 335 KRFSVFLTEAYEGSELIEKSPLFLWREK---LLSLVGYRGRKKKFEADSDSDEEG 386
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 172/358 (48%), Gaps = 31/358 (8%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEP-SKSLPASLIRD---SIDLPFRPIEFIRKYP 92
RD + +++ KNL +I + +LI P ++S+ + + + L F+RK+P
Sbjct: 54 RDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFP 113
Query: 93 TVFEEFL-AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHKIPL 151
+F + LQP +LT LD+ +E ++ + +RL+++L +S +PL
Sbjct: 114 HIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSL--PLVVERLVRILSMSASKTVPL 171
Query: 152 GVIERLKWDLGLPHDYVESVVPEFPDY-FRVRDDDVLELVCWSDELAVSVLEKKCMGKGK 210
+ +L D + ++ +V + P FR +D + C DE +V+ +E +
Sbjct: 172 RAVFKL-CDADEQNTHLLKLVGDVPSSGFRAAVEDWRVVECCKDESSVNSMEMR------ 224
Query: 211 EVAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDE----SDRWVVGVLH 266
+F ++ G + K + +KEW LPY+ PYE + +S ++ V ++H
Sbjct: 225 -YSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVH 283
Query: 267 EILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKIGTYTVVLREGYKRG 326
E + + V K E + + + G+ + L HPGIFYLS+K +TV LRE Y+RG
Sbjct: 284 EFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERG 343
Query: 327 SLIEDHPVMQLRGKYVHLM-----------NTVKEESKEGKVAQGKSSKKEGNVAGHE 373
LI +PV R + + L+ + + ++S +V QG++ +K +++ +
Sbjct: 344 CLIHPNPVYDARRRLLDLVALERRGLPAVNSKLHDKSCGNEVEQGENMQKHESLSSFD 401
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 44/290 (15%)
Query: 65 PSKSLPASLIRD---SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQ 121
P+ +P ++ ++DL + + +I KYP+ F+ Q H+ LT ++ L EEQ
Sbjct: 57 PNNQIPILTLQKKFKTLDLQGKALNWISKYPSCFQFH-----QDHVLLTKRMMKLVHEEQ 111
Query: 122 LTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV 181
D ++ RL KLLM+S + + + I +K GLP DY+ +V ++ D FR+
Sbjct: 112 SL--KDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRI 169
Query: 182 RDDD------VLELVCWSDELAVSVLEKKCMGKGKEVAFPVQFSSGFEMDKKYEKWLKEW 235
R++ V+EL+ W+ + AVS +E M G EV F S + K EK+ +E+
Sbjct: 170 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWV--KSLEKF-REF 226
Query: 236 NKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRF 295
+PYVSPY + L S E ++ +G++HE+L + + KK ++ LG F
Sbjct: 227 ELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKI---SIMKLGH-------F 276
Query: 296 KRALLQHPGIFYLSSKIGTYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
K+ G + ++REGY L++ +P++ ++ K+ +M
Sbjct: 277 KK---------------GVFFCLIREGYVGSQLVDKNPLVAVKEKFGKIM 311
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 161/328 (49%), Gaps = 23/328 (7%)
Query: 41 LDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLI-----RDSIDLPFRPIEFIRKYPTVF 95
D+ ++++K LK ++ ++ ++ +P++ + + +D + I +R++P VF
Sbjct: 92 FDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIVILRRFPGVF 151
Query: 96 EEFLAGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMISRIHKIPLGVIE 155
E G K+T E L EE L +++ + +L KLLM+ +I L I
Sbjct: 152 EIVEDGCYSLKFKMTSEAEKLYLEE-LRVRNEM-EDVVVTKLRKLLMMPLEKRILLEKIG 209
Query: 156 RLKWDLGLPHDYVESVVPEFPDYFRVRDDD---VLELVCWSDELAVSV------------ 200
L DLGLP ++ +++ +P++F+V + LEL W LAVS
Sbjct: 210 HLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPHLAVSAAELSAEENRIRE 269
Query: 201 LEKKCMGKGKEVAFP-VQFSSGFEMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESDR 259
+E++ + + F V+ G + K + + ++ +PY+SPY + + + ++ E ++
Sbjct: 270 VEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTPEKEK 329
Query: 260 WVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSSKIGTYTVVL 319
GV+HEIL + + K+T DN E + + L++HP +FY+S K +V L
Sbjct: 330 HACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFL 389
Query: 320 REGYKRGSLIEDHPVMQLRGKYVHLMNT 347
RE Y+ L++ ++ ++ K L++
Sbjct: 390 REAYRDSQLVDKDRLLLVKEKLRSLVDI 417
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 119 EEQLTFHSDIVKQQAADRL---LKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEF 175
EE L I++ DR+ KLLM+SR H+I L I ++ G+P D+ + V ++
Sbjct: 141 EELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKIHHVRNLFGIPDDFRDRV-EKY 199
Query: 176 PDYFRVRDDD---------VLELVCWSDELAVSVLEKKCM----GKGKEVAFPVQFSSGF 222
P+YFR+ DD VLELV W LAVS +EK+ M ++ FPV+
Sbjct: 200 PNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEKEFMVNEDDAKRKFTFPVKHGKDL 259
Query: 223 EMDKKYEKWLKEWNKLPYVSPYENAAHLPASSDESDRWVVGVLHEILHVLVPKKTERDNV 282
E+ + E+ + N LP VSPY + A + E++++ VG++HE L + + K+ ++
Sbjct: 260 ELGIEDERKMNLLNALPLVSPYSDGAKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHL 319
Query: 283 FVLGELLGLRSRFKRALLQHPGIFYLSSKIGTYTVVLREGYKR-GSLIEDHP 333
E L L++ P FYL+ + V L+EGY R G LI P
Sbjct: 320 VEFKEEFSLTKHTYHMLVKQPRAFYLAGTEMNWVVFLKEGYDRNGVLIHKDP 371
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 26/282 (9%)
Query: 87 FIRKYPTVFEEF--LAGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLKLLMIS 144
FI K+P VFE F L + +LT + + +E+L + + R K++M+S
Sbjct: 69 FILKFPYVFEIFEHLVQRIL-FCRLTRKTILQIEQERLALADQVGRTVTCLR--KMIMMS 125
Query: 145 RIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRD-----DDVLELVCWSDELAVS 199
++ L + + LGL D+ VV +P++FR+ D + +ELV + +LA
Sbjct: 126 NGLRLRLEHVRIARSALGLRDDFEYLVVLRYPEFFRLVDAKETRNKYIELVEFDPKLATC 185
Query: 200 VLE----KKCMGKGKE-----VAFPVQFSSGFEMDKKYEKWLKEWNKLPYVSPYENA--- 247
+E + +G E +F + F GF++ K + + +W LPY SPYE+
Sbjct: 186 AIEDARERVYRERGSEAEDIRFSFLIDFLPGFKISKYFRIAMWKWQSLPYWSPYEDVWGY 245
Query: 248 -AHLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIF 306
P + ++ V +HE+L + V KK + + + L + K LLQH GIF
Sbjct: 246 DLRSPEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIF 305
Query: 307 YLSSKIG---TYTVVLREGYKRGSLIEDHPVMQLRGKYVHLM 345
Y+S++ +TV LRE Y++G L+E + + R K ++
Sbjct: 306 YVSTRGNHGKLHTVFLREAYRKGELVEPNDLYLARRKLAEVV 347
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 28/335 (8%)
Query: 36 VRDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPASLIRD-----SIDLPFRPIEFIRK 90
VRDR LD V ++ + LK L+ +P LP ++ S+ P + I +
Sbjct: 57 VRDRTLDRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHR 116
Query: 91 YPTVFEEFL---------AGGLQPH--IKLTPEVLDLDAEEQLTFHSDIVKQQAADRLLK 139
YP++FE F A L P ++LTP L AEE S I A++L K
Sbjct: 117 YPSIFELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEEL-NLKSSI-STVLANKLQK 174
Query: 140 LLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRDDD---VLELVCWSDEL 196
LLM+S ++ L + L DLGLP ++ + + PD F++ D LELV W L
Sbjct: 175 LLMLSSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNL 234
Query: 197 AVSVLEKKCMGKGKEVAFPVQFSS-----GFEMDKKYEKWLKEWNKLPYVSPYENAAHLP 251
A + ++ V P++F G + + + +L ++ ++P V PY N A
Sbjct: 235 AKPLPPRESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPAESS 294
Query: 252 A-SSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIFYLSS 310
S E+++ V+ E+L + + K+T D++ + GL ++ + +++HP +FY S
Sbjct: 295 TKESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYTSL 354
Query: 311 KIGTYTVVLREGY-KRGSLIEDHPVMQLRGKYVHL 344
K +V L E + ++G+L+E V+ L+ K++ L
Sbjct: 355 KGQRDSVFLVERFDEKGNLLEKDEVLALQDKWMDL 389
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 145/298 (48%), Gaps = 35/298 (11%)
Query: 37 RDRGLDHAVEREKNLKPLIDLKNLIKLEPSKSLPA---SLIRDSIDLP--FRPIEFIRKY 91
R L+ A E+ K ++ L L++ EP +P S R I LP R +F+RK
Sbjct: 45 RVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKT 104
Query: 92 PTVFEEFL--AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQ---QAADRLLKLLMISRI 146
P +FE + G L + EVL EE H ++++ +AA+ + +LLM+S
Sbjct: 105 PKLFELYKDRNGVLWCGLTQKAEVL---MEE----HKRVIEENEDKAAEYVTRLLMMSVD 157
Query: 147 HKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVL 201
++ L I + D GLP D+ V ++P FRV D + LELV W+ E A++ +
Sbjct: 158 KRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEI 217
Query: 202 EKK---CMGKGKE---------VAFPVQFSSGFE-MDKKYEKWLKEWNKLPYVSPYENAA 248
EKK M E + FP++F + F+ + Y + +K + + Y+SPY +A
Sbjct: 218 EKKNKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAK 277
Query: 249 HLPASSDESDRWVVGVLHEILHVLVPKKTERDNVFVLGELLGLRSRFKRALLQHPGIF 306
L S E D+ V V+HE+L V K+ D++ L + + R LL+H GIF
Sbjct: 278 GLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 35/272 (12%)
Query: 41 LDHAVEREKNLKPLIDLKNLIKLEPSKSLPA---SLIRDSIDLP--FRPIEFIRKYPTVF 95
L+ A E+ K ++ L L++ EP +P S R I LP R +F+RK P +F
Sbjct: 19 LEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLF 78
Query: 96 EEFL--AGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQ---QAADRLLKLLMISRIHKIP 150
E + G L + EVL EE H ++++ +AA+ + +LLM+S ++
Sbjct: 79 ELYKDRNGVLWCGLTQKAEVL---MEE----HKRVIEENEDKAAEYVTRLLMMSVDKRVQ 131
Query: 151 LGVIERLKWDLGLPHDYVESVVPEFPDYFRV-----RDDDVLELVCWSDELAVSVLEKK- 204
L I + D GLP D+ V ++P FRV D + LELV W+ E A++ +EKK
Sbjct: 132 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKN 191
Query: 205 --CMGKGKE---------VAFPVQFSSGFE-MDKKYEKWLKEWNKLPYVSPYENAAHLPA 252
M E + FP++F + F+ + Y + +K + + Y+SPY +A L
Sbjct: 192 KMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLKP 251
Query: 253 SSDESDRWVVGVLHEILHVLVPKKTERDNVFV 284
S E D+ V V+HE+L V K+ +R +VF+
Sbjct: 252 GSLEFDKRAVAVMHELLSFTVEKRGKRFSVFL 283
>Medtr7g009010.1 | plant organelle RNA recognition domain protein |
LC | chr7:1887874-1884516 | 20130731
Length = 142
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 77 SIDLPFRPIEFIRKYPTVFEEFLAGGLQPHIKLTPEVLDLDAEEQLTFHSDIVKQQAADR 136
++DL + +I KYP+ F+ + H+ LT +++L EEQ D ++ R
Sbjct: 29 TLDLQGKAFNWISKYPSYFQ-----FQKDHVLLTKRMIELVHEEQSL--KDSLESVFVQR 81
Query: 137 LLKLLMISRIHKIPLGVIERLKWDLGLPHDYVESVVPEFPDYFRVRDD 184
L KL M+S + + I +K LG P DY+ +V ++PD FR+R++
Sbjct: 82 LAKLFMLSLNNCLNAMKINEIKNSLGFPDDYLIQIVAKYPDLFRIRNE 129