Miyakogusa Predicted Gene

Lj0g3v0140629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0140629.1 Non Characterized Hit- tr|C6TFP4|C6TFP4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54676 PE,87.8,0,no
description,NULL; NTF2-like,NULL; NTF2_DOMAIN,Nuclear transport factor
2, Eukaryote; NTF2,Nuclear,CUFF.8600.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080790.1 | nuclear transport factor 2 | HC | chr8:3477729...   233   3e-62
Medtr3g085070.1 | nuclear transport factor 2 | HC | chr3:3844009...   221   1e-58
Medtr2g461940.1 | nuclear transport factor 2 | HC | chr2:2562407...   130   2e-31
Medtr7g055610.1 | nuclear transport factor 2 and RNA recognition...    54   4e-08
Medtr7g057520.1 | nuclear transport factor 2 and RNA recognition...    54   5e-08
Medtr4g083150.2 | ras-GTPase-activating protein-binding protein,...    52   1e-07
Medtr4g083150.1 | ras-GTPase-activating protein-binding protein,...    52   1e-07
Medtr7g013840.2 | ras GTPase-activating binding-like protein | H...    51   2e-07
Medtr7g013840.1 | ras GTPase-activating binding-like protein | H...    51   2e-07
Medtr4g109640.5 | ras GTPase-activating binding-like protein | H...    50   4e-07
Medtr4g109640.3 | ras GTPase-activating binding-like protein | H...    50   4e-07
Medtr4g109640.2 | ras GTPase-activating binding-like protein | H...    50   4e-07
Medtr4g109640.1 | ras GTPase-activating binding-like protein | H...    50   4e-07
Medtr4g109640.6 | ras GTPase-activating binding-like protein | H...    50   5e-07
Medtr4g109640.4 | ras GTPase-activating binding-like protein | H...    50   5e-07

>Medtr8g080790.1 | nuclear transport factor 2 | HC |
           chr8:34777294-34780275 | 20130731
          Length = 123

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 113/123 (91%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
           MDPD LAKAFVEHYY+TFD+NR  LA LYQEGSML+FEGQKIQGS NIVAKLTSLPFQQC
Sbjct: 1   MDPDVLAKAFVEHYYTTFDNNRGGLATLYQEGSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 120
           HHSITTVDCQPSGA   MLVFVSGNLQLAGEQHAL FSQMFHLMPT QGSYYV+NDIFRL
Sbjct: 61  HHSITTVDCQPSGANGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSYYVMNDIFRL 120

Query: 121 NYA 123
           NYA
Sbjct: 121 NYA 123


>Medtr3g085070.1 | nuclear transport factor 2 | HC |
           chr3:38440090-38437587 | 20130731
          Length = 123

 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 111/123 (90%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
           MDP+AL+KAFVEHYY+TFD+NR  LA LYQ+GSML+FEGQ+I GS NIV KLTSLPFQQC
Sbjct: 1   MDPNALSKAFVEHYYTTFDTNRPNLAALYQDGSMLTFEGQQIMGSQNIVTKLTSLPFQQC 60

Query: 61  HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 120
           HHSITTVDCQPSGA   MLVFVSGNLQLAGEQHAL FSQMFHL+PT QGSYYV NDIFRL
Sbjct: 61  HHSITTVDCQPSGANGGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSYYVWNDIFRL 120

Query: 121 NYA 123
           NYA
Sbjct: 121 NYA 123


>Medtr2g461940.1 | nuclear transport factor 2 | HC |
          chr2:25624079-25623738 | 20130731
          Length = 113

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 73/94 (77%), Gaps = 6/94 (6%)

Query: 1  MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
          MDP+AL+KAF+EHYY+TFD+NR  LA      + L    ++I GS NIVAKLTS PFQQC
Sbjct: 1  MDPNALSKAFMEHYYTTFDTNRPNLA------AALYHCQRQIMGSQNIVAKLTSFPFQQC 54

Query: 61 HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHA 94
          HHSITTVDCQPSGA   MLVFVSGNLQLA EQH 
Sbjct: 55 HHSITTVDCQPSGADGGMLVFVSGNLQLADEQHG 88


>Medtr7g055610.1 | nuclear transport factor 2 and RNA recognition
           motif protein | HC | chr7:19043619-19039158 | 20130731
          Length = 519

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSF-EGQKIQGSSNIVA----KLTSLPF 57
           PD +  AFVE YY     +   +   YQ+ S L   E   I G +  +A    K+ S+ +
Sbjct: 19  PDVVGHAFVEQYYYMLHESPEHVHRFYQDVSKLGRPEPNGIIGITTTMAEIDKKILSMGY 78

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
            +    I +VD Q S     ++V V+G   +  +     F+Q F L P ++G Y+VLNDI
Sbjct: 79  SELSAEILSVDAQESFG-GGVIVLVTG-FMIGKDNVKQKFTQCFFLAPQEKG-YFVLNDI 135

Query: 118 FR 119
           FR
Sbjct: 136 FR 137


>Medtr7g057520.1 | nuclear transport factor 2 and RNA recognition
           motif protein | HC | chr7:20711228-20715478 | 20130731
          Length = 512

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSF-EGQKIQGSSNIVA----KLTSLPF 57
           PD +  AFVE YY     +   +   YQ+ S L   E   I G +  +A    K+ S+ +
Sbjct: 12  PDVVGHAFVEQYYYMLHESPEHVHRFYQDVSKLGRPEPNGIIGITTTMAEIDKKILSMGY 71

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
            +    I +VD Q S     ++V V+G   +  +     F+Q F L P ++G Y+VLNDI
Sbjct: 72  SELSAEILSVDAQESFG-GGVIVLVTG-FMIGKDNVKQKFTQCFFLAPQEKG-YFVLNDI 128

Query: 118 FR 119
           FR
Sbjct: 129 FR 130


>Medtr4g083150.2 | ras-GTPase-activating protein-binding protein,
           putative | HC | chr4:32360690-32356002 | 20130731
          Length = 468

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSLPF 57
           P  +  AFVE YYS    +   +   Y + S++S   +      +  ++ I  K+ SL +
Sbjct: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
                 + + D QPS     M+V V+G L    +     F+Q F L P  +G +YVLND+
Sbjct: 72  TSFRVEVLSADAQPSYNNGVMVV-VTGCLT-GTDNIKRKFAQSFFLAPQDKG-FYVLNDV 128

Query: 118 FR 119
           FR
Sbjct: 129 FR 130


>Medtr4g083150.1 | ras-GTPase-activating protein-binding protein,
           putative | HC | chr4:32360589-32355989 | 20130731
          Length = 468

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSLPF 57
           P  +  AFVE YYS    +   +   Y + S++S   +      +  ++ I  K+ SL +
Sbjct: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
                 + + D QPS     M+V V+G L    +     F+Q F L P  +G +YVLND+
Sbjct: 72  TSFRVEVLSADAQPSYNNGVMVV-VTGCLT-GTDNIKRKFAQSFFLAPQDKG-FYVLNDV 128

Query: 118 FR 119
           FR
Sbjct: 129 FR 130


>Medtr7g013840.2 | ras GTPase-activating binding-like protein | HC |
           chr7:4087004-4079699 | 20130731
          Length = 475

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQK-----IQGSSNIVAKLTSLPF 57
           P+ +  AFVE YY     +   +   YQE S++S          +     I  K+ SL F
Sbjct: 14  PEMVGNAFVEQYYHILHHSPELVYRFYQESSVISRPDSNGVMTSVTTMKGINEKILSLNF 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           ++    I T D Q S     + V V+G L    +     F+Q F L P   G ++VLND+
Sbjct: 74  KEFKAEIKTADAQKS-HKEGVTVLVTGCLT-GKDNLRRKFAQSFFLAPQDNG-FFVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr7g013840.1 | ras GTPase-activating binding-like protein | HC |
           chr7:4087004-4079699 | 20130731
          Length = 476

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQK-----IQGSSNIVAKLTSLPF 57
           P+ +  AFVE YY     +   +   YQE S++S          +     I  K+ SL F
Sbjct: 14  PEMVGNAFVEQYYHILHHSPELVYRFYQESSVISRPDSNGVMTSVTTMKGINEKILSLNF 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           ++    I T D Q S     + V V+G L    +     F+Q F L P   G ++VLND+
Sbjct: 74  KEFKAEIKTADAQKS-HKEGVTVLVTGCLT-GKDNLRRKFAQSFFLAPQDNG-FFVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.5 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45572715 | 20130731
          Length = 370

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCL-TGKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.3 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45572715 | 20130731
          Length = 370

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCL-TGKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.2 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45570261 | 20130731
          Length = 461

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCLT-GKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.1 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45570261 | 20130731
          Length = 461

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCLT-GKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.6 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45571868 | 20130731
          Length = 370

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCL-TGKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132


>Medtr4g109640.4 | ras GTPase-activating binding-like protein | HC |
           chr4:45574880-45571868 | 20130731
          Length = 370

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEG-----QKIQGSSNIVAKLTSLPF 57
           P  +  AFVE YY     +   +   YQ+ S+LS        + +  +  I   + SL +
Sbjct: 14  PQVVGNAFVEQYYHILHQSPDLVHRFYQDSSLLSRSDSNGVMKTVTTTQAINETIVSLNY 73

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
           + C   I T D Q S     ++V V+G L    +     FSQ F L P  +G YYVLND+
Sbjct: 74  EDCTAEIKTADAQES-YEKGVIVLVTGCL-TGKDNVRRKFSQTFFLAPQDKG-YYVLNDV 130

Query: 118 FR 119
           FR
Sbjct: 131 FR 132