Miyakogusa Predicted Gene

Lj0g3v0140559.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0140559.4 tr|C1DZ92|C1DZ92_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_98657
,33.7,0.000000002,seg,NULL; SUBFAMILY NOT NAMED,NULL; ANTIGEN
MLAA-22-RELATED,NULL; Apt1,FMP27,  C-terminal,CUFF.8587.4
         (408 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g099880.1 | localization and RNA pol II promoter Fmp27 dom...   536   e-152
Medtr5g066650.1 | localization and RNA pol II promoter Fmp27 dom...   442   e-124

>Medtr3g099880.1 | localization and RNA pol II promoter Fmp27 domain
            protein | HC | chr3:45820368-45850165 | 20130731
          Length = 2624

 Score =  536 bits (1382), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/408 (67%), Positives = 304/408 (74%), Gaps = 2/408 (0%)

Query: 1    MYRMMWGYFFHDEERDSQRRQEVWKVSTTAGARRVKKGXXXXXXXXXXXXXXXXXXXXXX 60
            MYRMMW YFF +EE+DSQRRQEVWKVSTTAGARRVKKG                      
Sbjct: 2219 MYRMMWEYFFPEEEQDSQRRQEVWKVSTTAGARRVKKGSSVLEASASSSQSAKESETSSK 2278

Query: 61   XVFSTMLFPATSQPSVRVDSAQASKAQNVRSNPGTSSTPELMRTSSFDRTWEETVAESVA 120
               S MLFPATSQP V  DSAQ SK Q V+ NPGTS TPEL RTSSFDR+WEETVAESVA
Sbjct: 2279 SGISAMLFPATSQPPVHADSAQISKVQTVKENPGTSITPELRRTSSFDRSWEETVAESVA 2338

Query: 121  DELVLQSFSSHKNGPFGFTELQDEAFKNKSKDSKGVKAGHSSLEETKVAKSLEEKKSRPR 180
            +ELVLQSFSS KNGPF  TE QDEA KNKSKDSKGVK G SS EE KVAKS EEK+SRPR
Sbjct: 2339 NELVLQSFSSSKNGPFSSTEHQDEA-KNKSKDSKGVKGGRSSHEEKKVAKSHEEKRSRPR 2397

Query: 181  KIIEFHNIKISQVELLVTYEGQRFVVNDLKLLMDQFHRAEFTGTWRKLFSRVKKHIIWGV 240
            K++EFHNIKISQVELLVTYEGQR VVNDLKLLMDQFHR EFTGTWRKLFSRVKKHIIWGV
Sbjct: 2398 KMMEFHNIKISQVELLVTYEGQRIVVNDLKLLMDQFHRPEFTGTWRKLFSRVKKHIIWGV 2457

Query: 241  LKSVAGMQGRKFINKGQSQPSGAGVPEIDINFSDNEGHAGKPDKYPLSWPKRPNDGAGDK 300
            LKSV GMQGRKF +KGQSQP   G+PEID  FS +EG  GK D+YPLSW KRP+DGAGD 
Sbjct: 2458 LKSVTGMQGRKFKDKGQSQPPEPGLPEIDTIFSQHEGQGGKSDQYPLSWLKRPSDGAGDG 2517

Query: 301  FVTSMKGLFNTQRRKAKAFVLKTMKGGADSDMQGDWSENDAEIIPFARQLSVVKTKKLIK 360
            FVTS++GLF+ Q RKAK FVL TM+G  ++D QGD S+ND E  PFARQL++  TKKLI+
Sbjct: 2518 FVTSIRGLFSAQSRKAKKFVLHTMRGDTENDFQGDSSDNDTEFSPFARQLTIT-TKKLIR 2576

Query: 361  QHSKKLFXXXXXXXXXXXXEALPSSPREIPIYXXXXXXXXXXYEAFDE 408
            +H+KK              E+LPSSPRE   +          YE F E
Sbjct: 2577 RHTKKFRSRGQKGSSSQQRESLPSSPRETTPFDSDSSSGSSPYEDFHE 2624


>Medtr5g066650.1 | localization and RNA pol II promoter Fmp27 domain
            protein | HC | chr5:28137001-28113373 | 20130731
          Length = 2613

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/393 (61%), Positives = 275/393 (69%), Gaps = 25/393 (6%)

Query: 1    MYRMMWGYFFHDEERDSQRRQEVWKVSTTAGARRVKKGXXXXXXXXXXXXXXXXXXXXXX 60
            MYRMMWGYFF +EERDSQRRQEVWKVST  GARRVKKG                      
Sbjct: 2228 MYRMMWGYFFPEEERDSQRRQEVWKVSTAGGARRVKKGSSAHEASISSNQSTKESEASSK 2287

Query: 61   XVFSTMLFPATSQPSVRVDSAQASKAQNVRSNPGTSSTPELMRTSSFDRTWEETVAESVA 120
               S +LFPAT+QPS    S Q SKAQNV+  PG  STPE           EETVAESVA
Sbjct: 2288 SGISALLFPATNQPS---GSTQTSKAQNVKIVPGAGSTPEC----------EETVAESVA 2334

Query: 121  DELVLQSFSSHKNGPFGFTELQDEAFKNKSKDSKGVKAGHSSLEETKVAKSLEEKKSRPR 180
            DE          NGPFG TE +DE  KNKSKD KGVKAG SSLEE KVAK  ++K+SRP+
Sbjct: 2335 DE----------NGPFGSTEQKDEVSKNKSKDVKGVKAGQSSLEEKKVAKPQDDKRSRPK 2384

Query: 181  KIIEFHNIKISQVELLVTYEGQRFVVNDLKLLMDQFHRAEFTGTWRKLFSRVKKHIIWGV 240
            KI+EFHNIKISQVEL +TYEGQRFVVND+KLLMDQF RAEFTGTW++LFSRVKKHIIWGV
Sbjct: 2385 KIMEFHNIKISQVELCITYEGQRFVVNDMKLLMDQFVRAEFTGTWQRLFSRVKKHIIWGV 2444

Query: 241  LKSVAGMQGRKFINKGQSQPSGAGVPEIDINFSDNEGHAGKPDKYPLSWPKRPNDGAGDK 300
            LKSV GMQG+KF +KGQ+QPSGAG PE + N SD EGHAGKPDK+  SWPKRP DGAGD 
Sbjct: 2445 LKSVTGMQGKKFKDKGQNQPSGAGAPEGEANLSDTEGHAGKPDKFSPSWPKRPTDGAGDG 2504

Query: 301  FVTSMKGLFNTQRRKAKAFVLKTMKGGADSDMQGDWSENDAEIIPFARQLSVVKTKKLIK 360
            FVTS++G+FN+QRRKAK  +LK  K  A+++  GD SEN+ E   FARQL+++K KKL K
Sbjct: 2505 FVTSVRGIFNSQRRKAKK-LLKPKKDEAENEGHGDLSENEVETTHFARQLTIIKAKKLFK 2563

Query: 361  QHSKK-LFXXXXXXXXXXXXEALPSSPREIPIY 392
            + +KK               E LPSS +E   Y
Sbjct: 2564 RDNKKPPHSKGQKGSSSIQNEELPSSSKEAIAY 2596