Miyakogusa Predicted Gene

Lj0g3v0139599.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0139599.1 tr|A9S7Q9|A9S7Q9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,49.02,1e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.8506.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031910.1 | mediator of RNA polymerase II transcription su...   200   3e-52

>Medtr1g031910.1 | mediator of RNA polymerase II transcription
           subunit 23 | HC | chr1:11217223-11235651 | 20130731
          Length = 1615

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/105 (91%), Positives = 98/105 (93%)

Query: 11  DRMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLTSAGVIDLLPGPNLQSAERLVATR 70
           DRMMDYMNMDERSIGMFWVVTYTMAQPA ETVMNWLTSAGVIDL P  NLQ  ERLV TR
Sbjct: 640 DRMMDYMNMDERSIGMFWVVTYTMAQPALETVMNWLTSAGVIDLAPATNLQPPERLVCTR 699

Query: 71  EVNPLPMSLLSGFSMNLCLKLSYQMEDSLFSGQVVPSIAMVETYT 115
           EVNPLPMSL+SGFSMNLCLKLSYQMEDSLFSGQV+PSIAMVETYT
Sbjct: 700 EVNPLPMSLISGFSMNLCLKLSYQMEDSLFSGQVLPSIAMVETYT 744