Miyakogusa Predicted Gene

Lj0g3v0138819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0138819.1 Non Characterized Hit- tr|I3T5G8|I3T5G8_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,82.14,9e-19,SYNTAXIN, ARABIDOPSIS THALIANA,NULL; SYNTAXIN,NULL;
coiled-coil,NULL; no description,NULL,CUFF.8435.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g028140.1 | syntaxin of plants 122 protein | HC | chr6:100...    98   2e-21
Medtr2g088700.1 | syntaxin of plants 122 protein | HC | chr2:374...    67   3e-12
Medtr2g088700.2 | syntaxin of plants 122 protein | HC | chr2:374...    67   3e-12
Medtr4g090900.1 | syntaxin of plants 122 protein | HC | chr4:359...    56   6e-09
Medtr2g012270.1 | syntaxin of plants 122 protein | HC | chr2:301...    55   1e-08

>Medtr6g028140.1 | syntaxin of plants 122 protein | HC |
           chr6:10021452-10025748 | 20130731
          Length = 305

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/56 (82%), Positives = 52/56 (92%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSVMIQL 56
           M KDVDEVKKTA+F+KTKVEELDKENLANRQKP CGKGSAVDRSRTATT+++  +L
Sbjct: 81  MEKDVDEVKKTAYFLKTKVEELDKENLANRQKPACGKGSAVDRSRTATTIALKKKL 136


>Medtr2g088700.1 | syntaxin of plants 122 protein | HC |
           chr2:37401493-37407040 | 20130731
          Length = 306

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSV 52
           M KD+DEV K AH +K K+E +++ENL NRQKPGC KG+ +DR+R   T S+
Sbjct: 86  MEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNSL 137


>Medtr2g088700.2 | syntaxin of plants 122 protein | HC |
           chr2:37401493-37404700 | 20130731
          Length = 307

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSV 52
           M KD+DEV K AH +K K+E +++ENL NRQKPGC KG+ +DR+R   T S+
Sbjct: 86  MEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNSL 137


>Medtr4g090900.1 | syntaxin of plants 122 protein | HC |
           chr4:35956371-35955454 | 20130731
          Length = 305

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTA 47
           M KDV++V K    IK K+E LD+ N ANR  PGCG GS+ DR+RT+
Sbjct: 81  MDKDVEQVLKRVKIIKGKLEALDRSNAANRNIPGCGPGSSADRTRTS 127


>Medtr2g012270.1 | syntaxin of plants 122 protein | HC |
           chr2:3014769-3015683 | 20130731
          Length = 304

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATT 49
           M KDV++V K    IK K+E L++ N ANR  PGCG GS+ DR+RT+  
Sbjct: 80  MDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVV 128