Miyakogusa Predicted Gene

Lj0g3v0134359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0134359.1 Non Characterized Hit- tr|I1KAC6|I1KAC6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22847 PE,85,0,seg,NULL;
N-GLYCOSYLASE/DNA LYASE,NULL; HhH-GPD,HhH-GPD domain;
OGG_N,8-oxoguanine DNA glycosylase, ,CUFF.8222.1
         (254 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088510.1 | 8-oxoguanine-DNA glycosylase | HC | chr3:40107...   375   e-104
Medtr4g106380.1 | HhH-GPD base excision DNA repair family protei...    50   2e-06

>Medtr3g088510.1 | 8-oxoguanine-DNA glycosylase | HC |
           chr3:40107855-40105284 | 20130731
          Length = 362

 Score =  375 bits (964), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 197/230 (85%)

Query: 2   WKVFSDSDARFAELARHLGGARVLRQDPFECLIQFLCSSNNNIGRITKMVDYVSSLGSYL 61
           WKVFSDSD RFAELA+HL GARVLRQDPFECLIQF+CSSNN+I RITKMVDYVSSLG+YL
Sbjct: 123 WKVFSDSDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYL 182

Query: 62  GPVGDFHFHAFPTXXXXXXXXXXXXRDAGFGYRAKYIIGTVNALQSKPEGGEEWLRSLRK 121
           G V  F FHAFPT            RDAGFGYRAKYI GTVN LQSKPEGGEEWL SLRK
Sbjct: 183 GCVEGFDFHAFPTLNQLSLVSEQQLRDAGFGYRAKYITGTVNVLQSKPEGGEEWLYSLRK 242

Query: 122 LDLQDVISALSTLPGVGPKVAACIALFSLDQHHAVPVDTHVWKIAKRYILPELAGSSLTP 181
           L+L+DVIS L  LPGVGPKVAACIAL+SLDQHHA+PVD H+W+IA++YILPELAGS LT 
Sbjct: 243 LELEDVISELIKLPGVGPKVAACIALYSLDQHHAIPVDVHIWRIAQKYILPELAGSKLTQ 302

Query: 182 KLCNRVAEAFVTKYGKYAGWAQTLLFIAELPSQKTLLPSHLWTTEQKSPA 231
           KL +RVAEAFVTK+GKYAGWAQ +LFIAELPSQK +LPSHL  T+Q+SPA
Sbjct: 303 KLHSRVAEAFVTKFGKYAGWAQAVLFIAELPSQKAILPSHLRATKQQSPA 352


>Medtr4g106380.1 | HhH-GPD base excision DNA repair family protein |
           HC | chr4:44120207-44117420 | 20130731
          Length = 280

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 94  RAKYIIGTVNALQSKPEGGEEWLRSLRKLDLQDVISALSTLPGVGPKVAACIALFSLDQH 153
           +AK I   ++ L  +   G+  L  LR L + +V + LS   G+GPK  +C+ +F+L Q 
Sbjct: 139 KAKCIKNLLSCLLER--KGKMCLEYLRDLSVDEVKAELSLFKGIGPKTVSCVLMFNL-QL 195

Query: 154 HAVPVDTHVWKIAK 167
              PVDTH+++IAK
Sbjct: 196 DDFPVDTHIFEIAK 209