Miyakogusa Predicted Gene
- Lj0g3v0133569.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0133569.1 Non Characterized Hit- tr|F4IH20|F4IH20_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,44.55,2e-18,seg,NULL,CUFF.8179.1
(182 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g071640.1 | autophagy-related protein | HC | chr3:32169128... 285 2e-77
Medtr3g071640.2 | autophagy-related protein | HC | chr3:32169128... 184 4e-47
>Medtr3g071640.1 | autophagy-related protein | HC |
chr3:32169128-32176491 | 20130731
Length = 284
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 131/153 (85%), Positives = 141/153 (92%)
Query: 29 CEFSFLDGNKLYNYTLSSPIRNFPHGVLSEDGFYKVAVNQTTLWFQLCDGMVFNHDPPTC 88
C+FSF DGNKLYNYTLSSPIRNFPHG+LSEDGFYKV+VNQTTLWFQLCDGM+FNHDPPTC
Sbjct: 34 CKFSFRDGNKLYNYTLSSPIRNFPHGILSEDGFYKVSVNQTTLWFQLCDGMIFNHDPPTC 93
Query: 89 ADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPHIGVIVKMSSS 148
ADCWDCGGPTRCGMEC AL++NNIGGYHVC AIG G KID++VIDKKNPH+GV VKMSSS
Sbjct: 94 ADCWDCGGPTRCGMECGALVSNNIGGYHVCAAIGRGPKIDIDVIDKKNPHVGVTVKMSSS 153
Query: 149 SPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 181
S KYNCSLAVSVLCNVN VQ P TLE+ G CNY
Sbjct: 154 SLKYNCSLAVSVLCNVNGVQGPQTLERSGDCNY 186
>Medtr3g071640.2 | autophagy-related protein | HC |
chr3:32169128-32176491 | 20130731
Length = 201
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 92/103 (89%)
Query: 79 MVFNHDPPTCADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPH 138
M+FNHDPPTCADCWDCGGPTRCGMEC AL++NNIGGYHVC AIG G KID++VIDKKNPH
Sbjct: 1 MIFNHDPPTCADCWDCGGPTRCGMECGALVSNNIGGYHVCAAIGRGPKIDIDVIDKKNPH 60
Query: 139 IGVIVKMSSSSPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 181
+GV VKMSSSS KYNCSLAVSVLCNVN VQ P TLE+ G CNY
Sbjct: 61 VGVTVKMSSSSLKYNCSLAVSVLCNVNGVQGPQTLERSGDCNY 103