Miyakogusa Predicted Gene

Lj0g3v0133569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0133569.1 Non Characterized Hit- tr|F4IH20|F4IH20_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,44.55,2e-18,seg,NULL,CUFF.8179.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g071640.1 | autophagy-related protein | HC | chr3:32169128...   285   2e-77
Medtr3g071640.2 | autophagy-related protein | HC | chr3:32169128...   184   4e-47

>Medtr3g071640.1 | autophagy-related protein | HC |
           chr3:32169128-32176491 | 20130731
          Length = 284

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 141/153 (92%)

Query: 29  CEFSFLDGNKLYNYTLSSPIRNFPHGVLSEDGFYKVAVNQTTLWFQLCDGMVFNHDPPTC 88
           C+FSF DGNKLYNYTLSSPIRNFPHG+LSEDGFYKV+VNQTTLWFQLCDGM+FNHDPPTC
Sbjct: 34  CKFSFRDGNKLYNYTLSSPIRNFPHGILSEDGFYKVSVNQTTLWFQLCDGMIFNHDPPTC 93

Query: 89  ADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPHIGVIVKMSSS 148
           ADCWDCGGPTRCGMEC AL++NNIGGYHVC AIG G KID++VIDKKNPH+GV VKMSSS
Sbjct: 94  ADCWDCGGPTRCGMECGALVSNNIGGYHVCAAIGRGPKIDIDVIDKKNPHVGVTVKMSSS 153

Query: 149 SPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 181
           S KYNCSLAVSVLCNVN VQ P TLE+ G CNY
Sbjct: 154 SLKYNCSLAVSVLCNVNGVQGPQTLERSGDCNY 186


>Medtr3g071640.2 | autophagy-related protein | HC |
           chr3:32169128-32176491 | 20130731
          Length = 201

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 92/103 (89%)

Query: 79  MVFNHDPPTCADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPH 138
           M+FNHDPPTCADCWDCGGPTRCGMEC AL++NNIGGYHVC AIG G KID++VIDKKNPH
Sbjct: 1   MIFNHDPPTCADCWDCGGPTRCGMECGALVSNNIGGYHVCAAIGRGPKIDIDVIDKKNPH 60

Query: 139 IGVIVKMSSSSPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 181
           +GV VKMSSSS KYNCSLAVSVLCNVN VQ P TLE+ G CNY
Sbjct: 61  VGVTVKMSSSSLKYNCSLAVSVLCNVNGVQGPQTLERSGDCNY 103