Miyakogusa Predicted Gene

Lj0g3v0132819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132819.1 tr|D7LPX2|D7LPX2_ARALL Calcium ion binding
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,39.62,3e-17,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; no description,NULL; PsbQ,Photosystem II
PsbQ,,gene.g10153.t1.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064070.1 | oxygen-evolving enhancer protein | HC | chr3:2...   168   1e-42
Medtr3g064070.2 | oxygen-evolving enhancer protein | HC | chr3:2...   168   1e-42
Medtr8g005175.1 | oxygen-evolving enhancer protein | HC | chr8:8...    61   2e-10
Medtr2g082580.1 | oxygen-evolving enhancer protein | HC | chr2:3...    48   2e-06

>Medtr3g064070.1 | oxygen-evolving enhancer protein | HC |
           chr3:28811778-28813888 | 20130731
          Length = 177

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 96/108 (88%)

Query: 1   MAPDLTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPG 60
           + PD TVEEAQN  +VHAQDLLQVR+LL ++SWK AQ+ LR+SSALL+KD+Y IIQ+KPG
Sbjct: 68  VVPDQTVEEAQNVVRVHAQDLLQVRDLLESKSWKIAQKELRRSSALLKKDIYTIIQNKPG 127

Query: 61  SERPQLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILS 108
           SER QLR L+S LFNNV+RLDYAARD+D PE+W+RYENIVVAVN+ILS
Sbjct: 128 SERSQLRVLYSTLFNNVTRLDYAARDQDGPEVWQRYENIVVAVNEILS 175


>Medtr3g064070.2 | oxygen-evolving enhancer protein | HC |
           chr3:28811890-28813945 | 20130731
          Length = 177

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 96/108 (88%)

Query: 1   MAPDLTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPG 60
           + PD TVEEAQN  +VHAQDLLQVR+LL ++SWK AQ+ LR+SSALL+KD+Y IIQ+KPG
Sbjct: 68  VVPDQTVEEAQNVVRVHAQDLLQVRDLLESKSWKIAQKELRRSSALLKKDIYTIIQNKPG 127

Query: 61  SERPQLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILS 108
           SER QLR L+S LFNNV+RLDYAARD+D PE+W+RYENIVVAVN+ILS
Sbjct: 128 SERSQLRVLYSTLFNNVTRLDYAARDQDGPEVWQRYENIVVAVNEILS 175


>Medtr8g005175.1 | oxygen-evolving enhancer protein | HC |
           chr8:83317-85681 | 20130731
          Length = 232

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%)

Query: 5   LTVEEAQNGAKVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERP 64
           LT  EA   AK  A++++  ++ +  ++W   Q  LR  +  LR DL  II +KP  ++ 
Sbjct: 126 LTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTIISAKPKDQKK 185

Query: 65  QLRNLFSILFNNVSRLDYAARDKDVPEIWRRYENIVVAVNDILS 108
            L+ L   LF ++  LDYAA+ K   +  + Y   V  +ND+LS
Sbjct: 186 SLKELTGKLFQDIDNLDYAAKVKSPSDAEKYYAIAVSTLNDVLS 229


>Medtr2g082580.1 | oxygen-evolving enhancer protein | HC |
           chr2:34656157-34654413 | 20130731
          Length = 230

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)

Query: 15  KVHAQDLLQVRELLGAESWKAAQRALRQSSALLRKDLYAIIQSKPGSERPQLRNLFSILF 74
           K +A DLL + +L+  ++    +R LR  S  +  D   +I + P  ++ QL ++ + LF
Sbjct: 128 KKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPVEDKQQLTDVANKLF 187

Query: 75  NNVSRLDYAARDKDVPEIWRRYENIVVAVNDIL 107
           +N  +L+ A+R+K++ E    Y+   V + D++
Sbjct: 188 DNFEKLEEASRNKNLLETQACYKETEVMLKDVM 220