Miyakogusa Predicted Gene

Lj0g3v0132789.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132789.2 Non Characterized Hit- tr|E1Z4R0|E1Z4R0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,28.33,1e-18,HYPOTHETICAL PROTEIN,NULL; WD40 REPEAT
FAMILY,NULL; WD40 repeat-like,WD40-repeat-containing domain;
,CUFF.8100.2
         (339 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g066000.1 | transducin/WD40 domain protein | HC | chr4:248...   484   e-137

>Medtr4g066000.1 | transducin/WD40 domain protein | HC |
           chr4:24861062-24870017 | 20130731
          Length = 476

 Score =  484 bits (1247), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/332 (70%), Positives = 272/332 (81%)

Query: 3   LLHLPLNLQLDAVKWNLHNQDEVVCASIKHQGLLIFDVASYSSEPTEVLKTRHRPTVDGY 62
           LLHL  + QLD VKWN  NQ+EV+C S+K   LLIFDV    SEP E L+TR   TV+G 
Sbjct: 140 LLHLSPDSQLDVVKWNPLNQNEVLCGSLKRNALLIFDVTYMMSEPIEELRTRTTTTVNGS 199

Query: 63  SILKGFSDVAFAPNDSRIFASDTRGTINVWDKRGKILPCLEFTSASHDILNSIQLSADNQ 122
           +I KG SDVAFA +DSRIF SDT GTINVWD+R K LPCLE TSAS   LNS+QL A+NQ
Sbjct: 200 NIPKGLSDVAFASDDSRIFGSDTHGTINVWDRRVKSLPCLELTSASFGTLNSVQLDAENQ 259

Query: 123 IIFGAGNKGLLHVWDIRGGRVSTNFQSHKELCYPPLTSVKLATLLEKIGSLKAQTKIISK 182
           II+GAG  G+++VWDIRGGR ST F SHKE C+PP+TSVKLATLLEKIGSLKAQT+I+ K
Sbjct: 260 IIYGAGRHGIVYVWDIRGGRASTAFLSHKETCHPPVTSVKLATLLEKIGSLKAQTEIVPK 319

Query: 183 EIHSIAINPSCPYQLAFHLDDGWSGILDINNFQVTHIHCPPPPWLNDSYVPTDVSYLRKP 242
           EI SI +NPSCPYQLAFHL+DGWSGILDIN F+VTHIHCPPP WLNDSY   D   LRKP
Sbjct: 320 EIQSIGLNPSCPYQLAFHLEDGWSGILDINKFEVTHIHCPPPAWLNDSYASLDQMDLRKP 379

Query: 243 SWLSTCSIYMTGSPCNSGIHLLDFYPSTSSPSHVDYRENIEEFNGQNKQNNRNRFISLSE 302
           SWLSTCS+Y+ GSP + G+H+LDFYPS +SPSHVDY+E+I+E +   KQ N+NRFI L E
Sbjct: 380 SWLSTCSVYLAGSPFDRGLHMLDFYPSINSPSHVDYKEDIQELSNPTKQKNQNRFIHLPE 439

Query: 303 EVISCAAHPLYNAIVAGTKESSLLVISQRRES 334
           EV+SCAAHPLYNAIVAGTKE+SLLVISQ+R+S
Sbjct: 440 EVLSCAAHPLYNAIVAGTKETSLLVISQKRKS 471