Miyakogusa Predicted Gene

Lj0g3v0132789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132789.1 Non Characterized Hit- tr|A5C5Z8|A5C5Z8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,62.26,0.000000000005,WD40 repeats,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; no
description,WD40/YVTN ,CUFF.8100.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g066000.1 | transducin/WD40 domain protein | HC | chr4:248...   226   8e-60

>Medtr4g066000.1 | transducin/WD40 domain protein | HC |
           chr4:24861062-24870017 | 20130731
          Length = 476

 Score =  226 bits (577), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 134/173 (77%)

Query: 3   LLHLPLNLQLDAVKWNLHNQDEVVCASIKHQGLLIFDVASYSSEPTEVLKTRHRPTVDGY 62
           LLHL  + QLD VKWN  NQ+EV+C S+K   LLIFDV    SEP E L+TR   TV+G 
Sbjct: 140 LLHLSPDSQLDVVKWNPLNQNEVLCGSLKRNALLIFDVTYMMSEPIEELRTRTTTTVNGS 199

Query: 63  SILKGFSDVAFAPNDSRIFASDTRGTINVWDKRGKILPCLEFTSASHDILNSIQLSADNQ 122
           +I KG SDVAFA +DSRIF SDT GTINVWD+R K LPCLE TSAS   LNS+QL A+NQ
Sbjct: 200 NIPKGLSDVAFASDDSRIFGSDTHGTINVWDRRVKSLPCLELTSASFGTLNSVQLDAENQ 259

Query: 123 IIFGAGNKGLLHVWDIRGGRVSTNFQSHKELCYPPLTSVKLATLLEKIGSLKV 175
           II+GAG  G+++VWDIRGGR ST F SHKE C+PP+TSVKLATLLEKIGSLK 
Sbjct: 260 IIYGAGRHGIVYVWDIRGGRASTAFLSHKETCHPPVTSVKLATLLEKIGSLKA 312