Miyakogusa Predicted Gene
- Lj0g3v0132739.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0132739.1 tr|A9SCD4|A9SCD4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164112,24.04,8e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; coiled-coil,NULL,CUFF.8094.1
(540 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g066010.1 | hypothetical protein | HC | chr4:24874867-2487... 767 0.0
Medtr2g098420.1 | hypothetical protein | HC | chr2:42072348-4207... 650 0.0
Medtr8g106210.1 | hypothetical protein | HC | chr8:44857746-4485... 200 4e-51
Medtr4g025420.2 | DUF641 family protein | HC | chr4:8609718-8611... 57 7e-08
Medtr4g025420.3 | DUF641 family protein | HC | chr4:8608106-8611... 57 7e-08
Medtr4g025420.1 | DUF641 family protein | HC | chr4:8608072-8611... 57 7e-08
Medtr3g462150.1 | DUF641 family protein | HC | chr3:24791371-247... 53 7e-07
>Medtr4g066010.1 | hypothetical protein | HC |
chr4:24874867-24877565 | 20130731
Length = 588
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/554 (71%), Positives = 438/554 (79%), Gaps = 25/554 (4%)
Query: 1 MAATATPSQVFKDYNNDGCSTNNGNPEITRNEIQTAIAKAVELRALHAALMRGNXXXXXX 60
MA+T T +QVFKD NNGN E TR EI+ AIAKAVELRALHAALMRGN
Sbjct: 1 MASTNTSTQVFKD-------NNNGNSETTRQEIKVAIAKAVELRALHAALMRGNSSTNAK 53
Query: 61 XXXXXXXXXXVSQFSAQDYPVFTPSYEDDSILGYSQNLMS-QTISESWEESALEGGNSIE 119
VSQFSA DYPVFTPSYEDD I+GY+QN TISESW+E E GNSIE
Sbjct: 54 FLSPSPVSRSVSQFSAHDYPVFTPSYEDDPIMGYNQNHTKCLTISESWDEG--ESGNSIE 111
Query: 120 SIVQDYKQKSSSRKG--LTSAFANLVSHSCPADDSKSVTGSCANHITVLQTSPCNDYYKS 177
+ VQDY+ K SSRKG L F NL SH CP DD+KSVTGSCANHITVLQTSP N+ Y+
Sbjct: 112 TSVQDYRDKPSSRKGVLLPCGFTNLESHICPVDDTKSVTGSCANHITVLQTSPTNESYRC 171
Query: 178 SRRNSLEDFKSISSCNNCNPAIITTEFESARNSKSSNTVVLPVTDXXXXXXXXXKTKGLI 237
RRNSLED KS+SSCN CNPAIIT+E ESARNSKSSN +V+P TD K+KG+I
Sbjct: 172 KRRNSLEDSKSVSSCNKCNPAIITSELESARNSKSSN-IVVPATDSHSSFQSETKSKGVI 230
Query: 238 SWLLPRLKKKKQKNENFPNTAESEDVSQALKDFGIMSIDTLKKELNEANENRDLALMEVS 297
SWL PRLKKK KNEN PN AESEDVSQ LKD GIMSI+ LKKEL EANENRD+ALMEVS
Sbjct: 231 SWLFPRLKKK-HKNENSPNRAESEDVSQVLKDIGIMSIEALKKELIEANENRDVALMEVS 289
Query: 298 EMRSSLGELQQKLEYLESYCEDLKKALRQAME--PKDTQLYEQ--LNNIP---KPFDGNG 350
EMR SLGEL+QK+EYLE+YCE+LKKAL+Q+M+ +D+QL EQ L+N+P K DGN
Sbjct: 290 EMRCSLGELRQKMEYLENYCEELKKALKQSMQTQARDSQLCEQIKLSNLPQRGKSIDGND 349
Query: 351 KNSMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETDHSL----NLLLQPYKLSLN 406
+NSMPV+EE M+EGFLQIVSESRLSVKQFCK LINNIEETDHSL N LLQPYKLSLN
Sbjct: 350 ENSMPVNEEVMIEGFLQIVSESRLSVKQFCKNLINNIEETDHSLIENLNSLLQPYKLSLN 409
Query: 407 SKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLSWNE 466
SK SKAVLYHFEAFINQ +QDFENC+FQ NGC+K +D R+++FSSFVALR LSWNE
Sbjct: 410 SKYSKAVLYHFEAFINQALYQDFENCIFQTNGCSKFIDRHEDRQAKFSSFVALRNLSWNE 469
Query: 467 VLRKGTKYYSEGFSKFCDQKMSCVNTSLNWTRPWPEQLLQAFFVAAKCMWLLHFLAFSFN 526
VLRKGTKYYSE FSKFCDQKMSC+ ++LNW RPWPEQLLQAFFVAAKCMWLLH LAFSFN
Sbjct: 470 VLRKGTKYYSEEFSKFCDQKMSCITSTLNWIRPWPEQLLQAFFVAAKCMWLLHLLAFSFN 529
Query: 527 PPLGVFRVEENATF 540
PPLGV RVEEN TF
Sbjct: 530 PPLGVLRVEENRTF 543
>Medtr2g098420.1 | hypothetical protein | HC |
chr2:42072348-42075120 | 20130731
Length = 620
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/557 (63%), Positives = 413/557 (74%), Gaps = 34/557 (6%)
Query: 3 ATATPSQVFKDYNNDGCSTNNGNPEITRNEIQTAIAKAVELRALHAALMRGNXXXXXXXX 62
A AT Q F+ NN E+ R EIQTAIAKAVELRALHAAL +GN
Sbjct: 2 AAATSQQPFQQNNN----------ELNRQEIQTAIAKAVELRALHAALTQGNSPSPSPGP 51
Query: 63 XXXX--XXXXVSQFSAQDYPVFTPSYEDDSILGYSQNLMSQTISESWEESALEGGNSIES 120
VSQFSAQDYPVFTPSYED+ + S+T+SESW+E+ +EGGN +ES
Sbjct: 52 AKARFPSPSPVSQFSAQDYPVFTPSYEDEP---HQNRTKSRTVSESWDENGVEGGNIMES 108
Query: 121 -IVQDYKQKSSSRKGLTSAFA---NLVSHSCP----ADDSKSVTGSCANHITVLQTSPC- 171
IVQDYK KS SRK L F+ N SH CP DD+KSVTGSCAN+ITVLQTSP
Sbjct: 109 TIVQDYKDKSCSRKVLRFGFSTNLNQESHMCPIDDDDDDTKSVTGSCANNITVLQTSPSP 168
Query: 172 NDYYKSSRRNSLEDFKSISSCNNCNPAIITTEFESARNSKSSNTVVLPVTDXXXXXXXXX 231
N+Y+KS RRNSL+D K +SSCN C PA+IT+EF++ +N+ S+ +V+P+TD
Sbjct: 169 NEYFKSRRRNSLDDVKPLSSCNRCKPALITSEFDNTKNNNRSSNIVVPLTDSHASFQTQH 228
Query: 232 KTKGLISWLLPRLKKKKQKNENF--PNTAESEDVSQAL-KDFGIMSIDTLKKELNEANEN 288
K+KG+ISWL P+ KKK + PN ESE+VSQ L KD GIMSI+ LK+EL EA+E+
Sbjct: 229 KSKGMISWLFPKFKKKHKNKNEIFSPNRTESEEVSQILNKDMGIMSIEMLKRELMEAHES 288
Query: 289 RDLALMEVSEMRSSLGELQQKLEYLESYCEDLKKALRQAMEPKDTQLYEQLNNIPKPFDG 348
RD A++EVSEMRSS GEL+QKLEYLE YCE+LKKAL+QAM+ K++ L ++ IP FDG
Sbjct: 289 RDSAIIEVSEMRSSFGELKQKLEYLEGYCEELKKALKQAMQAKESPLCDEKLGIP--FDG 346
Query: 349 NGKN-SMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETDHSL----NLLLQPYKL 403
NG+N MPV+E+ MVEGFLQIVSESRLSVKQFCK LI+ IEE D +L NLLLQPYKL
Sbjct: 347 NGENLMMPVNEDVMVEGFLQIVSESRLSVKQFCKTLISQIEENDQTLIENLNLLLQPYKL 406
Query: 404 SLNSKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLS 463
SL+SK SKAVLYHFEAFIN +QDFENCVFQKNG AK LDPR R +QFSSFVALR LS
Sbjct: 407 SLDSKYSKAVLYHFEAFINNSLYQDFENCVFQKNGSAKFLDPRQDRRAQFSSFVALRNLS 466
Query: 464 WNEVLRKGTKYYSEGFSKFCDQKMSCVNTSLNWTRPWPEQLLQAFFVAAKCMWLLHFLAF 523
WNEVL+KGTKYYSE FSKFCDQKMSC+ T+LNW RPWPE LLQAFFVAAKC+WLLH LAF
Sbjct: 467 WNEVLKKGTKYYSEEFSKFCDQKMSCIITTLNWLRPWPEPLLQAFFVAAKCIWLLHLLAF 526
Query: 524 SFNPPLGVFRVEENATF 540
SF P LG+ RVEEN +F
Sbjct: 527 SFTPTLGILRVEENRSF 543
>Medtr8g106210.1 | hypothetical protein | HC |
chr8:44857746-44856010 | 20130731
Length = 473
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 166/273 (60%), Gaps = 16/273 (5%)
Query: 273 MSIDTLKKELNEANENRDLALMEVSEMRSSLGELQQKLEYLESYCEDLKKALRQAMEPKD 332
M++ L +L A RD AL E S + +S+ EL++KL LE YC LK L +
Sbjct: 150 MAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEEC-NIGS 208
Query: 333 TQLYEQLNNIPKPFDGNGKNSMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETD- 391
+ + Q N F + +++ + +V+ FL VSE+R SV+ + L + T
Sbjct: 209 SNVVAQKN-----FHHHVQDN-----DNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGS 258
Query: 392 ---HSLNLLLQPYKLSLN-SKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRV 447
++LLLQPY + ++ SKN +++L++ EA +N+ FF+DFE+ FQKN C ++L+P
Sbjct: 259 KVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPME 318
Query: 448 YRESQFSSFVALRKLSWNEVLRKGTKYYSEGFSKFCDQKMSCVNTSLNWTRPWPEQLLQA 507
ES F+SF + L+W+EVL KGT+++SE FS+FCD+KMS + L W R W E LLQA
Sbjct: 319 RCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQA 378
Query: 508 FFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
FFVA+K +W++H LA S +P L +FRV++ F
Sbjct: 379 FFVASKSVWMVHLLANSVHPSLQIFRVDKGVNF 411
>Medtr4g025420.2 | DUF641 family protein | HC | chr4:8609718-8611676
| 20130731
Length = 419
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 34/213 (15%)
Query: 347 DGNGKNSMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETDHSLNLL---LQPYKL 403
DGNG PV + + F V + SV F K LIN ++ L+ ++P +
Sbjct: 171 DGNG--FFPV--DLTPDLFTSSVEAAAKSVHDFSKPLINMMKAAGWDLDAAANSIEPNVV 226
Query: 404 SLNSKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLS 463
+ K Y FE++I Q F FE Q++ K + + +ES F F+ALR++
Sbjct: 227 YAKRAHKK---YAFESYICQRMFGGFE----QESFSVKSDNITINKESFFHQFLALREID 279
Query: 464 WNEVLRKGTKYYSEGFSKFCDQKMSCV----------------NTSLNWTRPWPEQLLQA 507
++L + F KFC K V N + P Q
Sbjct: 280 PLDMLGQNPDSI---FGKFCRSKYLVVVHPKMEASFFGNLDQRNYVMGGGHPR-TPFYQV 335
Query: 508 FFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
F AK +WLLH LA+SF P + VF+V+ + F
Sbjct: 336 FLKLAKSIWLLHKLAYSFEPNVKVFQVKGGSEF 368
>Medtr4g025420.3 | DUF641 family protein | HC | chr4:8608106-8611676
| 20130731
Length = 419
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 34/213 (15%)
Query: 347 DGNGKNSMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETDHSLNLL---LQPYKL 403
DGNG PV + + F V + SV F K LIN ++ L+ ++P +
Sbjct: 171 DGNG--FFPV--DLTPDLFTSSVEAAAKSVHDFSKPLINMMKAAGWDLDAAANSIEPNVV 226
Query: 404 SLNSKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLS 463
+ K Y FE++I Q F FE Q++ K + + +ES F F+ALR++
Sbjct: 227 YAKRAHKK---YAFESYICQRMFGGFE----QESFSVKSDNITINKESFFHQFLALREID 279
Query: 464 WNEVLRKGTKYYSEGFSKFCDQKMSCV----------------NTSLNWTRPWPEQLLQA 507
++L + F KFC K V N + P Q
Sbjct: 280 PLDMLGQNPDSI---FGKFCRSKYLVVVHPKMEASFFGNLDQRNYVMGGGHPR-TPFYQV 335
Query: 508 FFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
F AK +WLLH LA+SF P + VF+V+ + F
Sbjct: 336 FLKLAKSIWLLHKLAYSFEPNVKVFQVKGGSEF 368
>Medtr4g025420.1 | DUF641 family protein | HC | chr4:8608072-8611720
| 20130731
Length = 419
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 34/213 (15%)
Query: 347 DGNGKNSMPVSEEAMVEGFLQIVSESRLSVKQFCKILINNIEETDHSLNLL---LQPYKL 403
DGNG PV + + F V + SV F K LIN ++ L+ ++P +
Sbjct: 171 DGNG--FFPV--DLTPDLFTSSVEAAAKSVHDFSKPLINMMKAAGWDLDAAANSIEPNVV 226
Query: 404 SLNSKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLS 463
+ K Y FE++I Q F FE Q++ K + + +ES F F+ALR++
Sbjct: 227 YAKRAHKK---YAFESYICQRMFGGFE----QESFSVKSDNITINKESFFHQFLALREID 279
Query: 464 WNEVLRKGTKYYSEGFSKFCDQKMSCV----------------NTSLNWTRPWPEQLLQA 507
++L + F KFC K V N + P Q
Sbjct: 280 PLDMLGQNPDSI---FGKFCRSKYLVVVHPKMEASFFGNLDQRNYVMGGGHPR-TPFYQV 335
Query: 508 FFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
F AK +WLLH LA+SF P + VF+V+ + F
Sbjct: 336 FLKLAKSIWLLHKLAYSFEPNVKVFQVKGGSEF 368
>Medtr3g462150.1 | DUF641 family protein | HC |
chr3:24791371-24788923 | 20130731
Length = 481
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 415 YHFEAFINQCFFQDFENCVFQKNG-CAKLLDPRVYRESQFSSFVALRKLSWNEVLRKGTK 473
Y +++I++ FQ F++ F +G + LL+P +R F+ + ++ + E+L
Sbjct: 295 YALDSYISRKIFQGFDHETFYMDGSLSSLLNPDQFRRDCFTQYKDMKSMDPAELLGILPT 354
Query: 474 YYSEGFSKFCDQK-MSCVNTSLNWT---------------RPWPEQLLQAFFVAAKCMWL 517
+ F KFC +K ++ V+ + + P E F AK +WL
Sbjct: 355 CH---FGKFCFKKYLAIVHPKMEESLFGNLEQHGQVQAGNHPRSE-FYNEFLGLAKTVWL 410
Query: 518 LHFLAFSFNPPLGVFRVEENATF 540
LH LAFS NPP F A F
Sbjct: 411 LHLLAFSLNPPPSQFEASRGAEF 433