Miyakogusa Predicted Gene

Lj0g3v0132579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132579.1 Non Characterized Hit- tr|I1JK94|I1JK94_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,72.54,0,CYT_DCMP_DEAMINASES,APOBEC/CMP deaminase, zinc-binding;
Cytidine deaminase-like,Cytidine deaminase-l,CUFF.8079.1
         (426 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g119220.1 | riboflavin biosynthesis protein RibD | HC | ch...   542   e-154
Medtr7g080117.1 | riboflavin biosynthesis protein RibD | HC | ch...   108   7e-24
Medtr7g080117.2 | riboflavin biosynthesis protein RibD | HC | ch...   108   8e-24

>Medtr4g119220.1 | riboflavin biosynthesis protein RibD | HC |
           chr4:49364638-49361029 | 20130731
          Length = 431

 Score =  542 bits (1397), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/358 (74%), Positives = 295/358 (82%), Gaps = 2/358 (0%)

Query: 71  DDGFYIRKCVELAKKALGFTSPNPLVGCVIVKDGKIVGQGFHPKAGQPHAEVFALRDAGD 130
           DDGFY+RK VELA+K LG+TSPNPLVGCVIVK G IVGQGFHPK GQPHAEVFALRDAGD
Sbjct: 73  DDGFYMRKSVELARKGLGYTSPNPLVGCVIVKHGNIVGQGFHPKPGQPHAEVFALRDAGD 132

Query: 131 LAEGATAYVSLEPCNHFGRTGPCSEALIRAKVKKVVIGMVDPNPIVASKGVDRLRDXXXX 190
           L+E ATAYVSLEPCNHFGRT PC+EALI+AK+KKVVIGMVDPNPIVASKGVDRLRD    
Sbjct: 133 LSENATAYVSLEPCNHFGRTPPCTEALIKAKIKKVVIGMVDPNPIVASKGVDRLRDAGIE 192

Query: 191 XXXXXXXXLCKSLLEAYIHRMLTGRPFLTLRYSLSVNGNFLVILGNGVTECGGYYSRLLQ 250
                   LCKSL EAYIH MLTG+P LTLRYSLSVNGN L  LGNGVT+ GGYYSRLLQ
Sbjct: 193 VVVGVEEELCKSLNEAYIHHMLTGKPLLTLRYSLSVNGNLLDSLGNGVTDSGGYYSRLLQ 252

Query: 251 EYDAVILSSSLFSENMSLDSMSASKEPGANQPIRIIIHRNPSSSN--QLATNEVTDKMII 308
           EYDAVILSSSLF EN+S + +  SKEPGANQPIRII+H++  SSN   L  NEVTDK II
Sbjct: 253 EYDAVILSSSLFRENLSANPVPTSKEPGANQPIRIIMHKDSGSSNPIPLVINEVTDKAII 312

Query: 309 FTDYEAAAAPEVAQQGIETVYLDQINLEVIMDYCYRQGLCSVLLDMRGHFSEFEELVKAG 368
           FT+   A  PE AQQGIE V +DQINL+VI+DYC RQGLCSVLLD+RG+FSE+E+LVK G
Sbjct: 313 FTNCRTATTPEEAQQGIEIVSMDQINLDVILDYCNRQGLCSVLLDVRGNFSEYEDLVKEG 372

Query: 369 IKKKYINTFVAEILPVWNGHAETDPLLPSKILEQGLQVVNLQSKTSDQSVVIEGYFKF 426
           IKKKYIN FV E+LPVWNG  + DPLLP K L+QG++V NL+   S QSVVIEGY  F
Sbjct: 373 IKKKYINKFVTEVLPVWNGCTKNDPLLPLKNLDQGVKVENLRPMASAQSVVIEGYLNF 430


>Medtr7g080117.1 | riboflavin biosynthesis protein RibD | HC |
           chr7:30448458-30456962 | 20130731
          Length = 596

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 29/338 (8%)

Query: 64  CAASGEVD----DGFYIRKCVELAKKALGFTSPNPLVGCVIVK-DGKIVGQGFHPKAGQP 118
           C AS +      D  YIR+   +A K+ GFTSP+P  GCVI    G + G+G+    G  
Sbjct: 20  CKASNDTHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTS 79

Query: 119 HAEVFALRDAGDLAEGATAYVSLEPCNHFGRTGPCSEALIRAKVKKVVIGMVDP------ 172
            AEV A+  AG+   GATAY+++EP +  G     S AL++  VK+VVIGM  P      
Sbjct: 80  PAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVS-ALLQGGVKRVVIGMRHPLQHFRG 138

Query: 173 NPIVA--SKG--VDRLRDXXXXXXXXXXXXLCKSLLEAYIHRMLTGRPFLTLRYSLSVNG 228
           N + A  S+G  VD L +             C  +    I R  +  PF  L+Y+++++G
Sbjct: 139 NAVRALRSQGLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLDG 198

Query: 229 NFLVILGNG----VTECGGYYSRLLQEYDAVILSSSLFSENMSLDSMSASKEPGANQPIR 284
                 G+       +       L    DA+I+  +    +   +    ++  G + PIR
Sbjct: 199 KIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRD---NPRLTARHGGGHMPIR 255

Query: 285 IIIHRN---PSSSNQLATNEVTDKMIIFTDYEAAAAPEVAQQGIETVYLDQINLEVIMDY 341
           I++ ++   P  +N    +EV+  ++       +    +A +G+E V  D +N   +M+Y
Sbjct: 256 IVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVVEFDILNPRDVMEY 315

Query: 342 CYRQGLCSVLLDMRGHFSEFEELVKAGIKKKYINTFVA 379
            Y +G  SV  +  G  +     + +G+  K +  FVA
Sbjct: 316 FYDRGYLSVFWECGGTLA--ASAISSGVIHK-VYAFVA 350


>Medtr7g080117.2 | riboflavin biosynthesis protein RibD | HC |
           chr7:30448458-30452495 | 20130731
          Length = 509

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 31/339 (9%)

Query: 64  CAASGEVD----DGFYIRKCVELAKKALGFTSPNPLVGCVIVK-DGKIVGQGFHPKAGQP 118
           C AS +      D  YIR+   +A K+ GFTSP+P  GCVI    G + G+G+    G  
Sbjct: 20  CKASNDTHNHALDAGYIRRAALIADKSAGFTSPHPNFGCVIATPSGDVAGEGYLYAQGTS 79

Query: 119 HAEVFALRDAGDLAEGATAYVSLEPCNHFGRTGPCSEALIRAKVKKVVIGMVDP------ 172
            AEV A+  AG+   GATAY+++EP +  G     S AL++  VK+VVIGM  P      
Sbjct: 80  PAEVQAVTSAGERCRGATAYLNMEPGDCDGDNTAVS-ALLQGGVKRVVIGMRHPLQHFRG 138

Query: 173 NPIVA--SKG--VDRLRDXXXXXXXXXXXXLCKSLLEAYIHRMLTGRPFLTLRYSLSVNG 228
           N + A  S+G  VD L +             C  +    I R  +  PF  L+Y+++++G
Sbjct: 139 NAVRALRSQGLQVDLLGEDLTSKIIEDAQKECLLVNAPLICRASSRVPFSVLKYAMTLDG 198

Query: 229 NFLVILGNG----VTECGGYYSRLLQEYDAVIL-SSSLFSENMSLDSMSASKEPGANQPI 283
                 G+       +       L    DA+I+  +++  +N  L     ++  G + PI
Sbjct: 199 KIAASTGHAWWISCKQSRNLVFELRARSDAIIVGGNTVRRDNPRL----TARHGGGHMPI 254

Query: 284 RIIIHRN---PSSSNQLATNEVTDKMIIFTDYEAAAAPEVAQQGIETVYLDQINLEVIMD 340
           RI++ ++   P  +N    +EV+  ++       +    +A +G+E V  D +N   +M+
Sbjct: 255 RIVMSQSLDLPEEANLWDMSEVSTIVVTQRGARRSLQKLLASKGVEVVEFDILNPRDVME 314

Query: 341 YCYRQGLCSVLLDMRGHFSEFEELVKAGIKKKYINTFVA 379
           Y Y +G  SV  +  G  +     + +G+  K +  FVA
Sbjct: 315 YFYDRGYLSVFWECGGTLA--ASAISSGVIHK-VYAFVA 350