Miyakogusa Predicted Gene

Lj0g3v0132489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132489.1 tr|A9RVJ9|A9RVJ9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161310,29.95,7e-17,RRM_1,RNA recognition motif domain;
RRM_5,NULL; SPOC,Spen paralogue and orthologue SPOC,
C-terminal;,CUFF.8071.1
         (737 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g079310.1 | RNA recognition motif (RRM) containing protein...   969   0.0  
Medtr4g068120.2 | flowering time control FPA-like protein | HC |...   150   6e-36
Medtr4g068120.1 | flowering time control FPA-like protein | HC |...   150   6e-36
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042...    54   4e-07
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042...    54   4e-07
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042...    54   4e-07

>Medtr3g079310.1 | RNA recognition motif (RRM) containing protein |
           HC | chr3:35657324-35668580 | 20130731
          Length = 928

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/694 (71%), Positives = 545/694 (78%), Gaps = 7/694 (1%)

Query: 46  PPSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQ 105
           PPSRHLWVGNLSH+IVEDELA PF+RFGPL+ VAFQPGRS+AFINF+ DEDAIDAMRSLQ
Sbjct: 40  PPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQ 99

Query: 106 GFPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYX 165
           GF LAGN LRIE+AKADKP                ALRGS P S RE RGRH SPEPHY 
Sbjct: 100 GFLLAGNPLRIEFAKADKPSTVMRDEDYSRDERRPALRGS-PFSQREFRGRHGSPEPHYS 158

Query: 166 XXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSL 225
                     EPSEVLWVGFPAQLKV+ESIL RAF+PFGEIEKI+TF GRSYAFVR+ S+
Sbjct: 159 DKFKLSDKNPEPSEVLWVGFPAQLKVDESILGRAFAPFGEIEKISTFPGRSYAFVRYSSV 218

Query: 226 TSACRARDNLRGKLFGNPRVHICFAKXXXXXXXXXXXXXXXXXXPLYKPRDRDGSSENLI 285
            SAC A D L+GKLFGNPRVHICFAK                  P YK   R GSSEN  
Sbjct: 219 ASACIALDALQGKLFGNPRVHICFAKSESGSSSSGKSSFNGPRSPSYKSSGRGGSSENFR 278

Query: 286 LDRSFGGDRNISSPNLYRNRDSGDSGSYDFNLRXXXXXXXXXXXXEQRNIGQKGTSLGAP 345
            +RSF G++NISSPN++ N DS DSG+YDFN R            EQRN+G+KGT LG  
Sbjct: 279 PERSFAGEQNISSPNMFSNWDSRDSGAYDFNNRVSSWAGGANTY-EQRNVGEKGTPLGVS 337

Query: 346 HEFYGHINSPPRERNVHLGDFPQKFPQRGAFFEDQQAMPEDIPYLHEAKRLRTGPSSPEG 405
            EFY HINSP RER+ H GDFPQK+PQRGAFFED Q +PED PYLH AK+L++G S PE 
Sbjct: 338 QEFYEHINSPSRERHFHQGDFPQKYPQRGAFFEDLQGLPEDAPYLHVAKKLKSGSSPPER 397

Query: 406 ELPEYPFSEFERQKHVFPRLLPDFPQREHFDQSFDSGNFAYRQTLDHRPNSPLAPLDNRH 465
           ELPEY FSE ERQKHV PRLLPDFP  E FD+SFD+GNF + QT +H P+SPL   D RH
Sbjct: 398 ELPEYAFSELERQKHVLPRLLPDFPHHEPFDKSFDAGNFPHGQTFNHPPSSPLVRFD-RH 456

Query: 466 EGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCRARCFP 525
           EG KPYD+F MGPG L  QS FVEKK FTPEPDNSS SEWKWEGTIAKGGTP+CRARCFP
Sbjct: 457 EGRKPYDNFQMGPGAL--QSNFVEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFP 514

Query: 526 VGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEK 585
           VGKVLDI LP+FLDCTARTSLDML+KHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEK
Sbjct: 515 VGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEK 574

Query: 586 QRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRLEYPTLNHGPMPIEGVMKN 645
           +RAAV+K+DDKTT+FLVPPS+FSEKVLKVPGKLSISGVILRLEYP LN GPM IE  MKN
Sbjct: 575 KRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIERDMKN 634

Query: 646 ENLLSYNENAFNPNSSFPSVRIP--PPSISEYGNSGISNHSFLGNKFPAAPSVSDSARAL 703
           ENL SYNEN  +PNSSFPSVRI   PPSISE GNSGISN S+LGNKF AAP  SDS+R+ 
Sbjct: 635 ENLSSYNENILHPNSSFPSVRISTNPPSISELGNSGISNLSYLGNKFAAAPLASDSSRSA 694

Query: 704 VSMPESHDDRSRSYPPLPPQTSGPNWSSHNLQNF 737
           V++ ESHD+RSR YP + P+TS PNWSSHN QN 
Sbjct: 695 VNLHESHDERSRDYPSIQPRTSVPNWSSHNPQNL 728


>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
           chr4:25458538-25448035 | 20130731
          Length = 973

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 122/231 (52%), Gaps = 30/231 (12%)

Query: 464 RHEGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCRARC 523
           R +G  P D    G G L S S  +   +   +PD+       W G IAKGGTPVCRARC
Sbjct: 436 RIDGALPNDDPYAGRGILGSASTRITGGVHAVQPDH------IWRGLIAKGGTPVCRARC 489

Query: 524 FPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLE 583
            PVGK +   LP+ +DC+ART LD LA HY  A+   +VFF+P S+ D   Y EF+ YL 
Sbjct: 490 IPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFGSYTEFLRYLG 549

Query: 584 EKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRLE-------YPTLNHGP 636
            K RA VAK ++ TT+FLVPPS+F   VLKV G   + GV+L+             +H P
Sbjct: 550 AKNRAGVAKFEN-TTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVQSGVPVHQSSHLP 608

Query: 637 MPIEGVM---------------KNENLLSYNEN-AFNPNSSFPSVRIPPPS 671
           +P    M               K E +L+ N N   + +S  P+ ++ PP+
Sbjct: 609 VPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPPT 659



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 20/207 (9%)

Query: 49  RHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGFP 108
           + LWVG +S  + +++L   F +FG ++   F   R+ A + F   +DAI AM+ + G  
Sbjct: 104 KQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKH 163

Query: 109 LAGNSLRIE-----YAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPH 163
           + G ++R++     YAK D+                   +G S   +  + G      P 
Sbjct: 164 IGGENIRVDFLRSNYAKRDQ------------GLDYGQFQGKSFGPSDSYSGHK---RPL 208

Query: 164 YXXXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFR 223
                       +P+ +LW+G+P  ++++E +L  A   FGEIE+I +   R+++FV FR
Sbjct: 209 NSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVEFR 268

Query: 224 SLTSACRARDNLRGKLFGNPRVHICFA 250
           S+  A RA++ L+G+LF +P + I ++
Sbjct: 269 SVDEARRAKEGLQGRLFNDPHITINYS 295



 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query: 47  PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
           PS +L+V NLS D+ + +L   F+++G LDSV     R++AF+ FKR +DA  A  +LQG
Sbjct: 25  PSNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQG 84

Query: 107 FPLAGNSLRIEYAKADK 123
           F   GNSLRIE+A+  K
Sbjct: 85  FNFRGNSLRIEFARPAK 101


>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
           chr4:25458538-25450507 | 20130731
          Length = 973

 Score =  150 bits (378), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/231 (39%), Positives = 122/231 (52%), Gaps = 30/231 (12%)

Query: 464 RHEGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCRARC 523
           R +G  P D    G G L S S  +   +   +PD+       W G IAKGGTPVCRARC
Sbjct: 436 RIDGALPNDDPYAGRGILGSASTRITGGVHAVQPDH------IWRGLIAKGGTPVCRARC 489

Query: 524 FPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLE 583
            PVGK +   LP+ +DC+ART LD LA HY  A+   +VFF+P S+ D   Y EF+ YL 
Sbjct: 490 IPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFGSYTEFLRYLG 549

Query: 584 EKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRLE-------YPTLNHGP 636
            K RA VAK ++ TT+FLVPPS+F   VLKV G   + GV+L+             +H P
Sbjct: 550 AKNRAGVAKFEN-TTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVQSGVPVHQSSHLP 608

Query: 637 MPIEGVM---------------KNENLLSYNEN-AFNPNSSFPSVRIPPPS 671
           +P    M               K E +L+ N N   + +S  P+ ++ PP+
Sbjct: 609 VPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPPT 659



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 20/207 (9%)

Query: 49  RHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGFP 108
           + LWVG +S  + +++L   F +FG ++   F   R+ A + F   +DAI AM+ + G  
Sbjct: 104 KQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKH 163

Query: 109 LAGNSLRIE-----YAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPH 163
           + G ++R++     YAK D+                   +G S   +  + G      P 
Sbjct: 164 IGGENIRVDFLRSNYAKRDQ------------GLDYGQFQGKSFGPSDSYSGHK---RPL 208

Query: 164 YXXXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFR 223
                       +P+ +LW+G+P  ++++E +L  A   FGEIE+I +   R+++FV FR
Sbjct: 209 NSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVEFR 268

Query: 224 SLTSACRARDNLRGKLFGNPRVHICFA 250
           S+  A RA++ L+G+LF +P + I ++
Sbjct: 269 SVDEARRAKEGLQGRLFNDPHITINYS 295



 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query: 47  PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
           PS +L+V NLS D+ + +L   F+++G LDSV     R++AF+ FKR +DA  A  +LQG
Sbjct: 25  PSNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQG 84

Query: 107 FPLAGNSLRIEYAKADK 123
           F   GNSLRIE+A+  K
Sbjct: 85  FNFRGNSLRIEFARPAK 101


>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
           chr3:50426665-50437301 | 20130731
          Length = 424

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 45  HPPSRHLWVGNLSHDIVEDELAIPF--LRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMR 102
           +P    ++VGNL HD+ + EL   F  L  G L+ V  Q G+ F F+ +   E+A  A++
Sbjct: 247 NPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 306

Query: 103 SLQGFPLAGNSLRIEYAKADKPPIT 127
              G P+ G +++  +     PP T
Sbjct: 307 MANGRPVRGKTMKCSWGSKPTPPGT 331


>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
           chr3:50427006-50436985 | 20130731
          Length = 440

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 45  HPPSRHLWVGNLSHDIVEDELAIPF--LRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMR 102
           +P    ++VGNL HD+ + EL   F  L  G L+ V  Q G+ F F+ +   E+A  A++
Sbjct: 263 NPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 322

Query: 103 SLQGFPLAGNSLRIEYAKADKPPIT 127
              G P+ G +++  +     PP T
Sbjct: 323 MANGRPVRGKTMKCSWGSKPTPPGT 347


>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
           chr3:50426599-50437301 | 20130731
          Length = 440

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 45  HPPSRHLWVGNLSHDIVEDELAIPF--LRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMR 102
           +P    ++VGNL HD+ + EL   F  L  G L+ V  Q G+ F F+ +   E+A  A++
Sbjct: 263 NPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQ 322

Query: 103 SLQGFPLAGNSLRIEYAKADKPPIT 127
              G P+ G +++  +     PP T
Sbjct: 323 MANGRPVRGKTMKCSWGSKPTPPGT 347