Miyakogusa Predicted Gene

Lj0g3v0131839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131839.1 Non Characterized Hit- tr|I3SJI7|I3SJI7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,K homology domain-like, alpha/beta; KH_2,K Homology
domain, type 2; 40S RIBOSOMAL PRO,CUFF.8018.1
         (95 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g023000.1 | 40S ribosomal S3-like protein | HC | chr1:7280...   189   6e-49
Medtr1g044660.1 | 40S ribosomal S3-like protein | HC | chr1:1686...   189   7e-49
Medtr6g052220.1 | 40S ribosomal S3-like protein | HC | chr6:1822...   187   1e-48
Medtr6g052140.1 | 40S ribosomal S3-like protein | HC | chr6:1817...   187   1e-48
Medtr1g111450.1 | 40S ribosomal S3-like protein | HC | chr1:5035...   159   6e-40

>Medtr1g023000.1 | 40S ribosomal S3-like protein | HC |
          chr1:7280350-7278985 | 20130731
          Length = 239

 Score =  189 bits (479), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/95 (97%), Positives = 95/95 (100%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPM+TEIIIRATRTQAVLG
Sbjct: 1  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95


>Medtr1g044660.1 | 40S ribosomal S3-like protein | HC |
          chr1:16863157-16866229 | 20130731
          Length = 239

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/95 (97%), Positives = 95/95 (100%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPM+TEIIIRATRTQAVLG
Sbjct: 1  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95


>Medtr6g052220.1 | 40S ribosomal S3-like protein | HC |
          chr6:18224802-18225776 | 20130731
          Length = 235

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/95 (96%), Positives = 95/95 (100%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGY+GVEVRVTPM+TEIIIRATRTQAVLG
Sbjct: 1  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95


>Medtr6g052140.1 | 40S ribosomal S3-like protein | HC |
          chr6:18174999-18174025 | 20130731
          Length = 235

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/95 (96%), Positives = 95/95 (100%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGY+GVEVRVTPM+TEIIIRATRTQAVLG
Sbjct: 1  MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95


>Medtr1g111450.1 | 40S ribosomal S3-like protein | HC |
          chr1:50357851-50355664 | 20130731
          Length = 237

 Score =  159 bits (401), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 88/95 (92%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQ+SKKRK VADGV  AE++E L+R LAEDGYSGVE+RVTP++TEIII+ATRTQAVLG
Sbjct: 1  MATQMSKKRKVVADGVLNAEMHEFLSRVLAEDGYSGVEIRVTPIRTEIIIKATRTQAVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELT+++ KRF FPENSV+LYAEKV+NRG
Sbjct: 61 EKGRRIRELTTLIHKRFNFPENSVQLYAEKVSNRG 95