Miyakogusa Predicted Gene

Lj0g3v0130859.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0130859.1 tr|Q1XBQ8|Q1XBQ8_SOYBN DNA mismatch repair
protein OS=Glycine max GN=MSH1 PE=2 SV=1,85.91,0,seg,NULL; PREDICTED
PROTEIN,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
MutS_I,DNA mismatc,CUFF.7940.1
         (731 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045670.1 | DNA mismatch repair protein | HC | chr1:171673...  1257   0.0  
Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC | c...    55   2e-07

>Medtr1g045670.1 | DNA mismatch repair protein | HC |
           chr1:17167339-17152759 | 20130731
          Length = 1138

 Score = 1257 bits (3252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/729 (82%), Positives = 655/729 (89%)

Query: 2   CKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFYE 61
           CKKPST+ LI+RLEYSNLLGLDSNLKNG+LK G+LN ++LQFKS+FPRQVLLCRVG+FYE
Sbjct: 92  CKKPSTMNLIERLEYSNLLGLDSNLKNGTLKAGTLNCDILQFKSQFPRQVLLCRVGDFYE 151

Query: 62  AIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIVEEVQGPA 121
           A+GIDAC+LVEYAGLNPFGGLRSDS P+AGCPVVNLRQTLDDLT NGYSVCIVEEVQGPA
Sbjct: 152 ALGIDACILVEYAGLNPFGGLRSDSIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPA 211

Query: 122 QARSRKRRFISGHAHPGNPYVYGLVGVDHDLDFPEPMPVVGISHSARGYCINMILETMKT 181
           QARS+KRRFISGHAHPG+PYVYGLVG DHD+DFPEPMPVVGISHSARGYCI+M++ETMKT
Sbjct: 212 QARSKKRRFISGHAHPGSPYVYGLVGADHDIDFPEPMPVVGISHSARGYCISMVVETMKT 271

Query: 182 YSLEDCLTEEAVVAKLRTCQYHHLFLHTSLRRNSCGTCNXXXXXXXXXXXXXCNSRHFEW 241
           YS EDCLTEEAVV KLRTCQYHHLFLHTSLRRNSCGT               C+SRH EW
Sbjct: 272 YSTEDCLTEEAVVTKLRTCQYHHLFLHTSLRRNSCGTSKWAEFGEGGLLWGECSSRHSEW 331

Query: 242 FDGNPVSDLLVKVKELYGLDYEVTFRNTTVSSGNRARPLSLGTSTQIGVIPTDGIPSLLK 301
           FDGNPVSDLLVKVKELYGLD+EV FRN TVSSGNRA+PL+LGTSTQIGVIPTDGIPSLLK
Sbjct: 332 FDGNPVSDLLVKVKELYGLDHEVLFRNVTVSSGNRAQPLTLGTSTQIGVIPTDGIPSLLK 391

Query: 302 VLLPSNCNGLPVLYVRDLLLNPPSYEIASNIQATCKLMSSVTCSIPEFTCVSSAKIVKLL 361
           VLLP +C+GLP+LYVRDLLLNPPSYEIAS IQATC+LMSSVTCSIPEFTCVSSAKI KLL
Sbjct: 392 VLLPPHCSGLPILYVRDLLLNPPSYEIASKIQATCRLMSSVTCSIPEFTCVSSAKIAKLL 451

Query: 362 EWREANHIELCRLKNVLDEVLQMHRTSELNEILKHLIDPTWVATGLEIDFKTLVGGCESA 421
           EW+EANHIELCR+KNVLDE+L M+R SELNEILKHLI PTWVATGL+IDFKTLV GCE A
Sbjct: 452 EWKEANHIELCRIKNVLDEILHMYRKSELNEILKHLIGPTWVATGLDIDFKTLVAGCEVA 511

Query: 422 SGKIGEVISLDGEKDQRVSSCSIIPNEFFEDMESAWKGRIKTIHMDDVLTEVEKAAEALH 481
           S KI EVISLDGE DQ+VSS S IP+EFFEDMES WKGRIKT +++DVLT V+KAAE L+
Sbjct: 512 SRKIDEVISLDGETDQKVSSFSAIPDEFFEDMESVWKGRIKTTNINDVLTSVDKAAEDLN 571

Query: 482 LAVSEDFTPIVSRIKATVAPLGGPKGEISYFREHETVWFKGKRFTPNLWAGSPGEEQIKQ 541
           LAV+EDF P+VSRIKA+++ L  PKGEISY RE E VWFKGK F PN+W G+PGEEQIK 
Sbjct: 572 LAVTEDFAPVVSRIKASMSQLRAPKGEISYSREQEAVWFKGKCFIPNIWTGTPGEEQIKH 631

Query: 542 LRHALDSKGRKVGEEWFTTPKVDSALARYHEANAKAKARVLELLRGLATELQSSINILVF 601
           L+HALDSKGRKVGEEWFTT KV++ALARYHEAN KA  RVLELLRGLA ELQS INI+VF
Sbjct: 632 LKHALDSKGRKVGEEWFTTTKVEAALARYHEANVKANTRVLELLRGLAAELQSHINIIVF 691

Query: 602 SSTLLVIAKALFAHVSEGRRRKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPYWFNIAE 661
           SSTLLVI KAL+AHVSEGRRRKWVFPT+VES+  ED     KN  + IVGLLPYWFNIAE
Sbjct: 692 SSTLLVITKALYAHVSEGRRRKWVFPTIVESQKLEDGMPSDKNRKMKIVGLLPYWFNIAE 751

Query: 662 GGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIMLH 721
           GGAV NTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGI GLMVPAESA IPYFDSIMLH
Sbjct: 752 GGAVLNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGLMVPAESAVIPYFDSIMLH 811

Query: 722 MKSYDSPAD 730
           MKSYDSPAD
Sbjct: 812 MKSYDSPAD 820


>Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC |
            chr7:44767037-44759016 | 20130731
          Length = 1280

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query: 670  DMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIMLHMKSYDS 727
            D  S  LLTGPN GGKS+LLR +C A +L   G  VP+ES  +   D I + M + D+
Sbjct: 1023 DQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPSESFELSPVDRIFVRMGARDN 1080