Miyakogusa Predicted Gene

Lj0g3v0130849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0130849.1 Non Characterized Hit- tr|K0SCL8|K0SCL8_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,29.45,1e-18,PREDICTED PROTEIN,NULL; DNA MISMATCH REPAIR MUTS
RELATED PROTEINS,NULL; no description,NULL; P-loop ,CUFF.7939.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045670.1 | DNA mismatch repair protein | HC | chr1:171673...   485   e-137
Medtr5g068600.7 | DNA mismatch repair MUTS family protein | HC |...    65   8e-11
Medtr5g068600.6 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr5g068600.5 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr5g068600.2 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr5g068600.1 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr5g068600.4 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr5g068600.3 | DNA mismatch repair MUTS family protein | HC |...    65   9e-11
Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC | c...    63   4e-10
Medtr4g111945.1 | DNA mismatch repair MSH3-like protein | HC | c...    55   8e-08
Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC | chr6:3...    50   2e-06
Medtr4g088920.1 | DNA mismatch repair protein MutS2 | HC | chr4:...    50   3e-06

>Medtr1g045670.1 | DNA mismatch repair protein | HC |
            chr1:17167339-17152759 | 20130731
          Length = 1138

 Score =  485 bits (1249), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/288 (82%), Positives = 258/288 (89%), Gaps = 1/288 (0%)

Query: 1    MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
            MSELRSII GTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDR GCLGIVSTHLH IF 
Sbjct: 829  MSELRSIIAGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRSGCLGIVSTHLHDIFT 888

Query: 61   LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
            LPLNI NT+HKAMGT CIDGQTKPTW LTDGVCKESLAFETAKREGIPEI+I+RAEDLYL
Sbjct: 889  LPLNITNTVHKAMGTTCIDGQTKPTWMLTDGVCKESLAFETAKREGIPEIIIQRAEDLYL 948

Query: 121  SVYAEKPHSAENFPKQEKHSTYIDVNNFNGTHLHPKKYISGASIEGINLANPIEVLQREV 180
            SVYA+K  SAEN+ KQE+ S+YI+ NN NGTH H +K++S  S EGI+LANPIEV  +EV
Sbjct: 949  SVYAKKTLSAENYAKQEELSSYINGNNSNGTH-HSEKFLSRISQEGISLANPIEVSHKEV 1007

Query: 181  ESAITVICQDLIMELQRKKIASELTKIKCFLIGTRERPPPSTIGSSSVYVMLRPDKKLYI 240
            ESAITVICQD I EL+RKKI SEL KIKCFLIGTRE PPP TIGSSSVYVMLRPDKKLY+
Sbjct: 1008 ESAITVICQDFIAELRRKKITSELIKIKCFLIGTREWPPPMTIGSSSVYVMLRPDKKLYV 1067

Query: 241  GETDDLEGRVQAHPSKEGMHDATFLYFLAPGKSLACQIESLLINQLPN 288
            GETD+LE RV+AH SKEGM DA+FLYFL PGKSLACQIE+LLINQLPN
Sbjct: 1068 GETDNLEDRVRAHRSKEGMQDASFLYFLVPGKSLACQIETLLINQLPN 1115


>Medtr5g068600.7 | DNA mismatch repair MUTS family protein | HC |
           chr5:29049681-29066879 | 20130731
          Length = 699

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 396 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 455

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 456 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 514

Query: 121 SVYAE 125
           S  AE
Sbjct: 515 SSSAE 519


>Medtr5g068600.6 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066879 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr5g068600.5 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr5g068600.2 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066879 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr5g068600.1 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29066750 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr5g068600.4 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr5g068600.3 | DNA mismatch repair MUTS family protein | HC |
           chr5:29054350-29067003 | 20130731
          Length = 799

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           + ++ +I   +T++SLVL+DE+  GT   +G  +  S++E+L   GCL  ++T  HG   
Sbjct: 496 LKQISNIKLQSTRQSLVLLDEVGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 555

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
             L   N   +    E  +   KPT+K+  G+   S A   A+R G+P +VI  A  LY 
Sbjct: 556 -TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVIDAARKLYG 614

Query: 121 SVYAE 125
           S  AE
Sbjct: 615 SSSAE 619


>Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC |
            chr7:44767037-44759016 | 20130731
          Length = 1280

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

Query: 1    MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDR-VGCLGIVSTHLHGIF 59
            +SE  ++++  T+ SLV +DE+ RGT T+ G  IA S++E L R V C G+ STH H + 
Sbjct: 1092 LSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRSVQCRGLFSTHYHRLA 1151

Query: 60   ALPLNIKNTLHKAM------GTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIK 113
               L         M      G E +D  T   ++L+ G C +S     A+  G+P  V++
Sbjct: 1152 IDYLKDPKVCLAHMACQVGSGNEGLDEVTF-LYRLSAGACPKSYGVNVARLAGLPTSVLQ 1210

Query: 114  RAE 116
            +A+
Sbjct: 1211 KAD 1213


>Medtr4g111945.1 | DNA mismatch repair MSH3-like protein | HC |
           chr4:46289309-46300169 | 20130731
          Length = 941

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIE-TLDRVGCLGIVSTHLHGIF 59
           M E  SI+ G T +SL+++DE+ RGT T  G  +A +I E  +D +    + +TH H + 
Sbjct: 727 MLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELT 786

Query: 60  ALP-LNIKNTLHKAM-------GTECIDGQTKP---TWKLTDGVCKESLAFETAKREGIP 108
           AL   N  N  HK +        +  ID  T+     +K+  G C +S     A+    P
Sbjct: 787 ALADENGSNDTHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFP 846

Query: 109 EIVIKRAED 117
           E V+  A +
Sbjct: 847 ESVVALARE 855


>Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC |
            chr6:32387897-32378956 | 20130731
          Length = 1155

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 31/160 (19%)

Query: 2    SELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETL-DRVGCLGIVSTHLHGIFA 60
            +E  S++   T+ SLV++DE+ RGT T  G  IA ++   L ++V C  + +TH H    
Sbjct: 962  TETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYH---- 1017

Query: 61   LPLNIKNTLHKAMGTECI--------------DGQTKPTWKLTDGVCKESLAFETAKREG 106
             PL  +   H  +  + +              D +    ++L  G C ES   + A   G
Sbjct: 1018 -PLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQELVFLYRLAPGACPESYGLQVALMAG 1076

Query: 107  IPE----IVIKRAEDLYLSVYAEKPHSAENFPKQEKHSTY 142
            IPE    +  K ++ + +S+        +NF   E+ S +
Sbjct: 1077 IPEKTVNVASKASQQMKISI-------GKNFRSSEQRSEF 1109


>Medtr4g088920.1 | DNA mismatch repair protein MutS2 | HC |
           chr4:35517782-35512675 | 20130731
          Length = 913

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 1   MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
           +S +R  +   +K+SLVL+DEI  GT+ ++G  ++ SI++ L     L +V+TH   +  
Sbjct: 492 ISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLST 551

Query: 61  LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAE 116
             +  K+T  +    E      +PT+++  G   +S A   A+  G  + +I  A+
Sbjct: 552 --MKEKDTCFENAAMEFSLETLQPTYRVLWGCTGDSNALSIAQSIGFDKNIIDHAQ 605