Miyakogusa Predicted Gene

Lj0g3v0129619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129619.1 Non Characterized Hit- tr|I1MQB5|I1MQB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54732
PE,96.33,0,Ribosomal_S3_C,Ribosomal protein S3, C-terminal; no
description,Ribosomal protein S3, C-terminal; RI,CUFF.7852.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g023000.1 | 40S ribosomal S3-like protein | HC | chr1:7280...   214   1e-56
Medtr1g044660.1 | 40S ribosomal S3-like protein | HC | chr1:1686...   210   3e-55
Medtr6g052220.1 | 40S ribosomal S3-like protein | HC | chr6:1822...   195   8e-51
Medtr6g052140.1 | 40S ribosomal S3-like protein | HC | chr6:1817...   195   8e-51
Medtr1g111450.1 | 40S ribosomal S3-like protein | HC | chr1:5035...   193   4e-50

>Medtr1g023000.1 | 40S ribosomal S3-like protein | HC |
           chr1:7280350-7278985 | 20130731
          Length = 239

 Score =  214 bits (546), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/108 (97%), Positives = 106/108 (98%), Gaps = 1/108 (0%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPV 107
           KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY RP AV+ANDIEVPV
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPV 234


>Medtr1g044660.1 | 40S ribosomal S3-like protein | HC |
           chr1:16863157-16866229 | 20130731
          Length = 239

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/105 (97%), Positives = 103/105 (98%), Gaps = 1/105 (0%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIE 104
           KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY RP AV+ANDIE
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIE 231


>Medtr6g052220.1 | 40S ribosomal S3-like protein | HC |
           chr6:18224802-18225776 | 20130731
          Length = 235

 Score =  195 bits (495), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/109 (88%), Positives = 102/109 (93%), Gaps = 2/109 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFK  YMISSGQPVKDY+DSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPDIVTIHTPK+EEEY RP AV+A  + VP+A
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVA-PLPVPIA 234


>Medtr6g052140.1 | 40S ribosomal S3-like protein | HC |
           chr6:18174999-18174025 | 20130731
          Length = 235

 Score =  195 bits (495), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 97/109 (88%), Positives = 102/109 (93%), Gaps = 2/109 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFK  YMISSGQPVKDY+DSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 108
           KIMLDWDPKGKQGPKTPLPDIVTIHTPK+EEEY RP AV+A  + VP+A
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVA-PLPVPIA 234


>Medtr1g111450.1 | 40S ribosomal S3-like protein | HC |
           chr1:50357851-50355664 | 20130731
          Length = 237

 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 100/109 (91%), Gaps = 2/109 (1%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRAQRAKSMKFK G M+SSGQPVKDYIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAQRAKSMKFKHGDMLSSGQPVKDYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVL-ANDIEVPV 107
           KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEE Y RP  +L   +IEVP+
Sbjct: 187 KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEVYNRPATILPTTNIEVPI 235