Miyakogusa Predicted Gene

Lj0g3v0129539.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129539.3 tr|B9GY61|B9GY61_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_647445 PE=4
SV=1,91.18,0.000000001,seg,NULL,CUFF.7840.3
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088520.1 | calpain family cysteine protease | HC | chr8:3...   358   2e-99

>Medtr8g088520.1 | calpain family cysteine protease | HC |
            chr8:36702342-36724494 | 20130731
          Length = 2155

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/194 (90%), Positives = 178/194 (91%)

Query: 1    MMEDAVHFLSKETVVQTIARSATKTRNALSGTYSAPQRSASSAALLIGDPTAMLDRAGNF 60
            MMEDAVHFLSKETVVQ IARSATKTRNA+SGTYSAPQRSASSAALLIGDPT  LDRAGNF
Sbjct: 1106 MMEDAVHFLSKETVVQAIARSATKTRNAISGTYSAPQRSASSAALLIGDPTISLDRAGNF 1165

Query: 61   VLPRADVMKLRDRLRNEELVAGSFFSRLRYGRTFRHDPTSDVDHRRVMCAHARILALEEA 120
            VLPRADVMKLRDRLRNEELVAGS FSRLRY  TFRH+PTSDVDHRRVMCAHARILALEEA
Sbjct: 1166 VLPRADVMKLRDRLRNEELVAGSLFSRLRYASTFRHEPTSDVDHRRVMCAHARILALEEA 1225

Query: 121  IDTEWVYMWDKFXXXXXXXXXXTSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPEDR 180
            IDTEWVYMWDKF          TSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPEDR
Sbjct: 1226 IDTEWVYMWDKFGGYLLLLLGLTSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPEDR 1285

Query: 181  RQFEIIQESYIREK 194
            RQFEIIQESYIREK
Sbjct: 1286 RQFEIIQESYIREK 1299