Miyakogusa Predicted Gene

Lj0g3v0129539.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129539.2 tr|B9GY61|B9GY61_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_647445 PE=4
SV=1,91.18,0.000000001,seg,NULL,CUFF.7840.2
         (399 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g088520.1 | calpain family cysteine protease | HC | chr8:3...   633   0.0  

>Medtr8g088520.1 | calpain family cysteine protease | HC |
            chr8:36702342-36724494 | 20130731
          Length = 2155

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/376 (83%), Positives = 323/376 (85%)

Query: 1    MLLLSAISALIVVVKPWTXXXXXXXXXXXXXXXXXXXHYWASNNFYLSRKQMVFVCXXXX 60
            +LL   ISALIVV+KPWT                   H+WASNNFYLSR QMVFVC    
Sbjct: 924  LLLFGGISALIVVIKPWTIGVAFLLVLLLMVLAIGAIHHWASNNFYLSRIQMVFVCFFAF 983

Query: 61   XXXXXXXXVGWFEDKPFFGASVGYFIFLFLLAGRALTVLLSNPIVVYSPRVLPVYVYDAH 120
                    VGWFEDKPF GASVGYF+FLFLLAGRALTVLLS PIVVYSPRVLPVYVYDAH
Sbjct: 984  LLALAAFLVGWFEDKPFVGASVGYFLFLFLLAGRALTVLLSYPIVVYSPRVLPVYVYDAH 1043

Query: 121  ADCGKNVSVSFLMLYGIALATEGWGVVASLKIYPPFAGAAVSAITLVVSFGFAVSRPCLT 180
            ADCGKNVS++FLMLYGIALATEGWGVVASLKIYPPFAGAAVSA+TLVVSFGFAVSRPCLT
Sbjct: 1044 ADCGKNVSIAFLMLYGIALATEGWGVVASLKIYPPFAGAAVSAVTLVVSFGFAVSRPCLT 1103

Query: 181  LKMMEDAVHFLSKETVVQTIARSATKTRNALSGTYSAPQRSASSAALLIGDPTAMLDRAG 240
            LKMMEDAVHFLSKETVVQ IARSATKTRNA+SGTYSAPQRSASSAALLIGDPT  LDRAG
Sbjct: 1104 LKMMEDAVHFLSKETVVQAIARSATKTRNAISGTYSAPQRSASSAALLIGDPTISLDRAG 1163

Query: 241  NFVLPRADVMKLRDRLRNEELVAGSFFSRLRYGRTFRHDPTSDVDHRRVMCAHARILALE 300
            NFVLPRADVMKLRDRLRNEELVAGS FSRLRY  TFRH+PTSDVDHRRVMCAHARILALE
Sbjct: 1164 NFVLPRADVMKLRDRLRNEELVAGSLFSRLRYASTFRHEPTSDVDHRRVMCAHARILALE 1223

Query: 301  EAIDTEWVYMWDKFXXXXXXXXXXTSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPE 360
            EAIDTEWVYMWDKF          TSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPE
Sbjct: 1224 EAIDTEWVYMWDKFGGYLLLLLGLTSKAEQAQDEVRLRLFLDSIGFSDLSAKKIKKWMPE 1283

Query: 361  DRRQFEIIQESYIREK 376
            DRRQFEIIQESYIREK
Sbjct: 1284 DRRQFEIIQESYIREK 1299