Miyakogusa Predicted Gene

Lj0g3v0129409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129409.1 Non Characterized Hit- tr|I1H2V2|I1H2V2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.42,0.000000000004,seg,NULL,CUFF.7829.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC | chr4:44406871...   140   1e-33

>Medtr4g107390.1 | aminoacyl-tRNA synthetase | HC |
           chr4:44406871-44399957 | 20130731
          Length = 755

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 114/193 (59%), Gaps = 27/193 (13%)

Query: 102 SVSEDSDKPRKIKQLPGRTRREAKRRSVGEIQSSLRRSKRATRNRIDYRQXXXXXXXXXX 161
           S+SEDSDKPRK+K+LPGRTRRE KRRSVGEIQSS RRS+RATRNRIDYRQ          
Sbjct: 571 SISEDSDKPRKVKRLPGRTRRETKRRSVGEIQSSPRRSRRATRNRIDYRQ-YEMSDSETE 629

Query: 162 XXXXXXXHASEDHRSHPS------------------ENGEYMMXXXXXXXXXXXXXXMKV 203
                  +AS +H S PS                  ENGEY+M              MKV
Sbjct: 630 FTKLKKSNASANH-SDPSENEIENDNENENENDNENENGEYVMESEDSDSIEDGDHEMKV 688

Query: 204 TEPVSHPAVGENEDPAVGENEQNHDPPPIKSSSPGQEEAEGMTKRRFLDLNELAPSSGFD 263
            EPV  P      D  V ENEQN  PP   SS PGQ+E EG  KRRFLDLNELAPS GFD
Sbjct: 689 DEPVGAP------DTKVEENEQNQ-PPEKSSSPPGQDEVEGTGKRRFLDLNELAPSPGFD 741

Query: 264 DGPNTATKDEGND 276
           DGPNT  KDE ND
Sbjct: 742 DGPNTIMKDEDND 754