Miyakogusa Predicted Gene

Lj0g3v0129049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129049.1 tr|F6UJ99|F6UJ99_MOUSE Symplekin (Fragment)
OS=Mus musculus GN=Sympk PE=4 SV=1,50,2e-19,Symplekin_C,Symplekin
C-terminal; SYMPLEKIN,NULL; FAMILY NOT NAMED,NULL,CUFF.7795.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g015850.1 | symplekin tight junction protein carboxy-termi...   240   3e-64
Medtr3g111090.1 | symplekin tight junction protein carboxy-termi...   145   1e-35

>Medtr4g015850.1 | symplekin tight junction protein carboxy-terminal
            protein | HC | chr4:4819906-4805018 | 20130731
          Length = 1338

 Score =  240 bits (612), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/139 (84%), Positives = 129/139 (92%)

Query: 1    MRTVLQAIGAFPTLVDFIMEILSRLVKKQIWKYPKLWVGFLKCVQLTKPQSLGVLLQLPI 60
            MRTVLQAIGAFPTLVDFIM IL+RLVKKQ+WKYPKLWVGFLKC+QLTKPQS GVLLQLP 
Sbjct: 1200 MRTVLQAIGAFPTLVDFIMGILARLVKKQVWKYPKLWVGFLKCLQLTKPQSFGVLLQLPP 1259

Query: 61   AQLENALNRIAALKAPLIAHATQPEVQSTLPRSVLVLLGIVSDAQISNQAQTSQTQTDET 120
             QLE ALNRIAALKAPLIAHA+QP++QS+LPRSVLV+LGIVSD+Q+ +Q QTSQTQT ET
Sbjct: 1260 PQLEAALNRIAALKAPLIAHASQPDIQSSLPRSVLVVLGIVSDSQVPSQPQTSQTQTGET 1319

Query: 121  SLSDKDTVTEKSKESSIAS 139
            S SDKDT+TEKSKESS AS
Sbjct: 1320 SNSDKDTMTEKSKESSTAS 1338


>Medtr3g111090.1 | symplekin tight junction protein carboxy-terminal
            protein | HC | chr3:51920629-51901963 | 20130731
          Length = 1338

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 92/123 (74%), Gaps = 1/123 (0%)

Query: 1    MRTVLQAIGAFPTLVDFIMEILSRLVKKQIWKYPKLWVGFLKCVQLTKPQSLGVLLQLPI 60
            MRT++QA+ AFP LVDF+MEILS+LV KQ+W+ PKLWVGFLKCV  T+P+S  VLLQLP 
Sbjct: 1210 MRTIIQAVDAFPALVDFVMEILSKLVTKQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPP 1269

Query: 61   AQLENALNRIAALKAPLIAHATQPEVQSTLPRSVLVLLGIVSDAQISNQAQTSQTQTDET 120
             QLE+ALN+ A L+ PL ++A QP V+S+L RS LV+LG+ ++  +     TS   + ET
Sbjct: 1270 QQLESALNKHANLRGPLASYANQPTVKSSLSRSTLVVLGLANETHVQQHLPTSLHHS-ET 1328

Query: 121  SLS 123
            S S
Sbjct: 1329 STS 1331