Miyakogusa Predicted Gene

Lj0g3v0128989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128989.1 tr|G7JIY5|G7JIY5_MEDTR L-lactate dehydrogenase
OS=Medicago truncatula GN=MTR_4g101130 PE=3 SV=1,90.16,0,LDH
C-terminal domain-like,Lactate dehydrogenase/glycoside hydrolase,
family 4, C-terminal; no descr,CUFF.7793.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101130.1 | L-lactate dehydrogenase A-like protein | HC | ...   226   4e-60
Medtr5g012390.1 | L-lactate dehydrogenase A-like protein | HC | ...   198   8e-52

>Medtr4g101130.1 | L-lactate dehydrogenase A-like protein | HC |
           chr4:41764793-41767250 | 20130731
          Length = 350

 Score =  226 bits (576), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 116/122 (95%)

Query: 1   MSFLEKQQIAVEKETLENIHRTVIESAYEVISLKGYTSWAIGYSVASLARSILRDQRKID 60
           +SFLEKQQIA EKETLENIH+TVI SAYEVISLKGYTSWAIGYSVASLARSI+RDQRKI 
Sbjct: 229 LSFLEKQQIAYEKETLENIHKTVINSAYEVISLKGYTSWAIGYSVASLARSIIRDQRKIH 288

Query: 61  PVSVLAKGFYGIGDAEVFLSLPAQLGRGGVLGVTNVHLNEEEEQRLRDSAKAILEVQSQL 120
           PVSVLAKGFYGIGD EVFLSLPAQLGRGGVLGVTNVH+N+EEEQRLRDSAK ILEVQ+QL
Sbjct: 289 PVSVLAKGFYGIGDVEVFLSLPAQLGRGGVLGVTNVHMNKEEEQRLRDSAKTILEVQTQL 348

Query: 121 EI 122
            I
Sbjct: 349 GI 350


>Medtr5g012390.1 | L-lactate dehydrogenase A-like protein | HC |
           chr5:3706531-3705145 | 20130731
          Length = 350

 Score =  198 bits (504), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 108/122 (88%)

Query: 1   MSFLEKQQIAVEKETLENIHRTVIESAYEVISLKGYTSWAIGYSVASLARSILRDQRKID 60
           +SFLEKQQIA EKE LENIH+ VI  AYEVISLKGYTSWAIGYSVA+LAR+I+R+QRKI 
Sbjct: 229 LSFLEKQQIAYEKEMLENIHKEVINGAYEVISLKGYTSWAIGYSVANLARTIMRNQRKIH 288

Query: 61  PVSVLAKGFYGIGDAEVFLSLPAQLGRGGVLGVTNVHLNEEEEQRLRDSAKAILEVQSQL 120
           PVSVLAKGFYGI   EVF+SLPAQLGRGGVLGVTN+H+ EEE +RLRDSA  ILE+Q+QL
Sbjct: 289 PVSVLAKGFYGIDGGEVFISLPAQLGRGGVLGVTNIHMTEEEMKRLRDSAITILELQNQL 348

Query: 121 EI 122
            I
Sbjct: 349 GI 350