Miyakogusa Predicted Gene

Lj0g3v0128909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128909.1 Non Characterized Hit- tr|I1KMT9|I1KMT9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.83,4e-18,seg,NULL,CUFF.7780.1
         (200 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g034790.1 | myb transcription factor | HC | chr2:13342703-...    61   8e-10

>Medtr2g034790.1 | myb transcription factor | HC |
           chr2:13342703-13345610 | 20130731
          Length = 332

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 108/237 (45%), Gaps = 62/237 (26%)

Query: 1   MRSLNDQQSLPPIDMNVATKSKRRGGGTRSKLPMEDENNMMAVSLSQNSLETIPKRK-AA 59
           MRS+N  +S PP+DM  A+ SK    G  +   +E++N M   SL QNSLE +PK K  +
Sbjct: 120 MRSIN--ESPPPLDM--ASTSKTINQGKINNPSIEEDNGM---SLIQNSLEPMPKEKTTS 172

Query: 60  IFNRGEGDQVSMILDACDQMQQGNINSTAAASYNASVNGDHIEGFGLGPYH---DEIMKL 116
            +   +G +     ++  +M +GNIN+T A+    S N  +I+  GLGPY    DEIMKL
Sbjct: 173 QYYNVQGVEDISSENSIYEM-KGNINNTVASY--PSKNELNIDE-GLGPYKWLDDEIMKL 228

Query: 117 GHMFEN-------------------------------XXXXXXXXXXXXXXWHTTPTSGC 145
            +MF N                                             ++     G 
Sbjct: 229 RNMFLNGIGNYNYVTMHENDEKGKYECDSRKMHVEIMETNKEMKSEICGSSYNGESGEGY 288

Query: 146 LSVNSI-STTDF-QCFDWDLQGTVQSHNEWDLYEEQDQVVTGLWGTGIGEI-NGFHQ 199
           +S  S+ S TD+ Q  DWD             + ++DQ+ T LWG GIGEI NGF+Q
Sbjct: 289 ISNASVNSATDYDQLSDWD-------------FCQEDQMKTCLWGPGIGEIMNGFYQ 332