Miyakogusa Predicted Gene

Lj0g3v0128779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128779.1 tr|B9I2Z5|B9I2Z5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_661879 PE=4 SV=1,93.33,0,no
description,Calponin homology domain; Calponin-homology domain,
CH-domain,Calponin homology domai,CUFF.7770.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g108330.1 | RP/EB family microtubule-associated protein | ...   239   4e-64
Medtr0036s0210.1 | RP/EB family microtubule-associated protein |...   236   4e-63
Medtr5g016520.1 | RP/EB family microtubule-associated protein | ...   213   4e-56
Medtr2072s0010.1 | microtubule-associated protein RP/EB family p...    89   8e-19

>Medtr4g108330.1 | RP/EB family microtubule-associated protein | HC
           | chr4:44937960-44942067 | 20130731
          Length = 290

 Score =  239 bits (610), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 117/121 (96%)

Query: 1   MASNIGMMDSAYFVGRNEILSWINNRLQLNLSRIEEAASGDVQCQMMDMTHPGVVPMHKV 60
           MA+NIG+MDSAYFVGRNEIL+WINN LQLNLSRIE+AASG VQCQMMD+TH GVVPMHKV
Sbjct: 1   MATNIGIMDSAYFVGRNEILNWINNLLQLNLSRIEDAASGAVQCQMMDVTHQGVVPMHKV 60

Query: 61  NFDAKTEYDKIQNYKILQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLKHYCDSVNGG 120
           NFDAKTEYDKIQNYK+LQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLK YCDS+NGG
Sbjct: 61  NFDAKTEYDKIQNYKVLQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLKRYCDSINGG 120

Query: 121 I 121
           I
Sbjct: 121 I 121


>Medtr0036s0210.1 | RP/EB family microtubule-associated protein | HC
           | scaffold0036:80265-85368 | 20130731
          Length = 274

 Score =  236 bits (601), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 116/121 (95%)

Query: 1   MASNIGMMDSAYFVGRNEILSWINNRLQLNLSRIEEAASGDVQCQMMDMTHPGVVPMHKV 60
           MA++IG+MDSAYFVGRNEILSWIN RLQLNLSRIEEAASG VQCQM+DMT+PGVVPMHKV
Sbjct: 1   MATSIGIMDSAYFVGRNEILSWINKRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKV 60

Query: 61  NFDAKTEYDKIQNYKILQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLKHYCDSVNGG 120
           NFDAK+EYD IQNYK+LQDVFNKLKI KHIEV+RLVKGRPLDNLEFLQWLK YCDSVNGG
Sbjct: 61  NFDAKSEYDMIQNYKVLQDVFNKLKIAKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGG 120

Query: 121 I 121
           I
Sbjct: 121 I 121


>Medtr5g016520.1 | RP/EB family microtubule-associated protein | HC
           | chr5:5934758-5937281 | 20130731
          Length = 333

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 108/120 (90%)

Query: 1   MASNIGMMDSAYFVGRNEILSWINNRLQLNLSRIEEAASGDVQCQMMDMTHPGVVPMHKV 60
           MA+NIG+MD+AYFVGR+EILSWIN+ LQLNLS++EEA SG V CQ++D  HPG VPMHKV
Sbjct: 1   MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGTVPMHKV 60

Query: 61  NFDAKTEYDKIQNYKILQDVFNKLKIDKHIEVSRLVKGRPLDNLEFLQWLKHYCDSVNGG 120
           NFDAK EY+ IQNYK+LQDVFNKLKI KHIEVS+LVKGRPLDNLEF+QW+K YCDSVN G
Sbjct: 61  NFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 120


>Medtr2072s0010.1 | microtubule-associated protein RP/EB family
          protein | HC | scaffold2072:460-212 | 20130731
          Length = 52

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 46/52 (88%)

Query: 37 AASGDVQCQMMDMTHPGVVPMHKVNFDAKTEYDKIQNYKILQDVFNKLKIDK 88
          AASG VQ QM+DMT+PGVVPM+KVNFDAKTEYD IQNYK+LQ  FNKLKI K
Sbjct: 1  AASGAVQFQMLDMTYPGVVPMYKVNFDAKTEYDMIQNYKVLQMRFNKLKIAK 52