Miyakogusa Predicted Gene

Lj0g3v0128759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128759.1 tr|A9S5H1|A9S5H1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162953,27.75,2e-16, ,CUFF.7784.1
         (305 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g013095.1 | X-ray induced transcript protein | HC | chr8:4...   414   e-116
Medtr7g056400.1 | X-ray induced transcript protein, putative | H...   338   5e-93
Medtr3g064750.1 | hypothetical protein | HC | chr3:29187042-2919...    57   3e-08

>Medtr8g013095.1 | X-ray induced transcript protein | HC |
           chr8:4114305-4118631 | 20130731
          Length = 307

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/310 (71%), Positives = 251/310 (80%), Gaps = 15/310 (4%)

Query: 1   MDFNNNDKEPWNWHGEGYTLQETSNFEISEELWNDVPQNEEDLSYMFDDET--TPVKAVG 58
           M ++   +EPWNWHGE Y +Q+TSNFEISEE+W DVPQN EDLSYMFD ET  TPVKA G
Sbjct: 8   MFYDMVSREPWNWHGEDYGVQKTSNFEISEEMWTDVPQNGEDLSYMFDGETETTPVKACG 67

Query: 59  DLAYN---GDSNNVPKELEECRETSQVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKED 115
           DLAYN   GDS  V KELEE R+TSQ KRRRMLQF+  D D SL   EM++   KNGK+D
Sbjct: 68  DLAYNVSNGDSYYVAKELEEGRDTSQAKRRRMLQFDDVDMDQSLCNMEMSSTCFKNGKDD 127

Query: 116 AMKDIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQLSPDDLNFTG 175
           ++K+IFPEVS W+SGA  E  L N       DLE+TE WLAEY NDT+MQ SPDDLNF+G
Sbjct: 128 SIKEIFPEVSQWMSGAP-EYTLENVP-----DLEATEEWLAEYLNDTEMQFSPDDLNFSG 181

Query: 176 ADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFA 235
           ADDVHID+AEL +I PS +Q++V +   VTRTPKNI+FKGRKSFIRTPTKLASTVAYPF 
Sbjct: 182 ADDVHIDVAELCNITPSHQQNVVPQ--PVTRTPKNIVFKGRKSFIRTPTKLASTVAYPFT 239

Query: 236 FIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSAFSGKPVVGKTKIRTEGGK 295
           FIKPSGA GD+TLKEINQRIRT  PSKS Q+S+D SAYPKSAFSGKPVVGKTKIRTEGGK
Sbjct: 240 FIKPSGAQGDITLKEINQRIRT--PSKSAQSSDDSSAYPKSAFSGKPVVGKTKIRTEGGK 297

Query: 296 GSITIMRTKG 305
           GSITIMRTKG
Sbjct: 298 GSITIMRTKG 307


>Medtr7g056400.1 | X-ray induced transcript protein, putative | HC |
           chr7:19897039-19902058 | 20130731
          Length = 306

 Score =  338 bits (866), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 190/308 (61%), Positives = 235/308 (76%), Gaps = 20/308 (6%)

Query: 7   DKEPWNWHGE-GYTLQETSNFEISEELWNDVPQNEEDLSYMFDDETTPVKAVGDLAY--N 63
           DK PWNWH E GY LQ+ SNF+IS+ELWN+VP   EDL    DDETTPVKA  D  Y  N
Sbjct: 10  DKAPWNWHREEGYCLQKPSNFDISQELWNEVP-GIEDLPIELDDETTPVKACMDFPYSVN 68

Query: 64  G-DSNNVPKELEECRETS-QVKRRRMLQFNSQDRD--HSLSKEEMTAAYLK-NGKEDAMK 118
           G +SN++ K+ EEC ETS Q KRRRMLQFN+Q+++  HSLS E M++AYL+ NG + + +
Sbjct: 69  GSESNDIQKDQEECSETSSQAKRRRMLQFNNQNQNRNHSLSDEHMSSAYLQLNGTDYSNE 128

Query: 119 DIFPEVSPWVSGASSECALGNASASGYDDLESTEGWLAEYFNDTDMQ-LSPDDLNFTGAD 177
           DIFPEVS W+S  S      NAS+S Y+DLES E WLA+   DT++Q L PD+ NF+GAD
Sbjct: 129 DIFPEVSQWLSEDSE-----NASSSNYEDLESAEKWLADCLKDTEIQQLYPDNPNFSGAD 183

Query: 178 DVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAFI 237
           DVHID  E+ ++ P  EQ++ Q  + ++ TP+ I+FKGRKS ++TPT L+S+VAYPFAF+
Sbjct: 184 DVHIDATEICNLTPPFEQNVAQ--LQISSTPRKIVFKGRKSIMKTPTGLSSSVAYPFAFV 241

Query: 238 KPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSAFSGKPVVGKTKIRTEGGKGS 297
           KP G  GDVTLKEIN+RI++PPPSKSKQ  ED   YPKSAFSGKPVVGKTKI TEGGKGS
Sbjct: 242 KPCGDRGDVTLKEINKRIQSPPPSKSKQIKED---YPKSAFSGKPVVGKTKILTEGGKGS 298

Query: 298 ITIMRTKG 305
           ITIMRT+G
Sbjct: 299 ITIMRTRG 306


>Medtr3g064750.1 | hypothetical protein | HC |
           chr3:29187042-29191148 | 20130731
          Length = 274

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 8/83 (9%)

Query: 230 VAYPFAFIKPSGAHGDVTLKEINQRIRTPP--PSKSKQNSEDPSAYP-----KSAFSGKP 282
           +AYPF  +KP G  G+ T+K+IN ++   P  P       ED   +          SGK 
Sbjct: 193 IAYPFELVKPGGVEGETTIKDINHQMMMSPSKPIPHPVAVEDYGTHSCISNRGYGISGKE 252

Query: 283 VVGKTKIRTEGGKGSITIMRTKG 305
           V   T+I+T  G+GSITI+RTKG
Sbjct: 253 VAALTRIQTR-GRGSITIIRTKG 274