Miyakogusa Predicted Gene

Lj0g3v0128609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128609.1 Non Characterized Hit- tr|A5AWI5|A5AWI5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,78,4e-17,no
description,Thioredoxin-like fold; seg,NULL;
Thioredoxin-like,Thioredoxin-like fold; Thioredoxin,,CUFF.7755.1
         (217 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g075100.1 | thioredoxin | HC | chr1:33187260-33183618 | 20...   240   8e-64

>Medtr1g075100.1 | thioredoxin | HC | chr1:33187260-33183618 |
           20130731
          Length = 212

 Score =  240 bits (612), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 138/213 (64%), Gaps = 5/213 (2%)

Query: 1   MDLTSNP----KQSLFCLKWPWDEXXXXXXXXXXXXHCNFESPWLFRSLQTLGSIASNFA 56
           M L  NP      S FC+KWPWD              CNFE PWLF+SLQ LGS A NFA
Sbjct: 1   MSLIPNPNSKSSSSSFCIKWPWDSLNPNPKISQTPNPCNFEPPWLFKSLQNLGSFAFNFA 60

Query: 57  GXXXXXXXXXXXXXLNLDGKMGHRKNLKKVXXXXXXXXXXXXXXRAFASALASGKEATVL 116
                            D K+    N KK               RAFA+AL SGKEAT+L
Sbjct: 61  NSISNSSISQTPNSSKPDQKLNLTWN-KKEEKASGGAKQAEAEQRAFAAALESGKEATLL 119

Query: 117 EFYSPKCRLCNSLLNFVSEVEARNYNWLNIVMADAENENWLPELLNYDVRYVPCFVLLDN 176
           EFYSPKCRLCNSLL FV E+E RN  WLN+VMADAEN+ WLPELLNYDV YVPCFVL+DN
Sbjct: 120 EFYSPKCRLCNSLLGFVLEMETRNAQWLNVVMADAENQKWLPELLNYDVSYVPCFVLIDN 179

Query: 177 KGRAIAKSGVPSSRLHVIAGLSHLLKMKRPQQN 209
           KGRA+AKSGVP SRLHVIAGLSHLLKMKRPQQ+
Sbjct: 180 KGRALAKSGVPHSRLHVIAGLSHLLKMKRPQQS 212